Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele42g1176 | ATGAGAGAAACTAAGATAATCACGAAAAAGTTTGTGAAATCAGAGTTTCTGAACGGAGCTCGGAGGGTTGTCCGGATCAGTGTCACTGATCAAAACGCGACTGACACGTCAAGCGGCGATGACGAATATGAACACTTCCAACCCAGAAGAATGAGGAGGATCGTCAACGAAATCAGAATCGAGAAATGGTCCGATTTTCCGGCGAACAGAGAGGCTTATGGAGGAGGTATGAGCACCTCTTGTTCGAAGCAGAGGTCCAGAAACAACACCTCCGGCAAGGCCAGACCCGGAAAATCCGACCAGGTTGAAGCGAAGGTAAAGAAGTACCGCGGTGTTCGACTGCGGCCCTGGGGTCGGTGGTCGGCGGAGATCAGAGATCCAGCGCGTCGACAAAGGCTGTGGCTGGGCACTTTCGACACGGCGGAAGAGGCCGCCGTGTCGTACGATAGAGCAGCTATTCGTATTAAAGGTGCGAATGCATTGACAAATATTCTCCAACCACCACCTGAAATCGCCGAAACCGTCGAAGAATCCGTATCGACCTCAATGGACAACAACATCGAGTTGTTTAAAGAGCCTCACGTGTCTTCCCCAACCTCTGTTCTGAGGTTCCAGTCTCTAGAAGAACCGAAAACAGAACCCAGAGAAGCAGAAGCAGAGCCATATTTCCAAGACAGTAATTTATGGTTCTCATCAGATTCTCCATTTTGTGATAGATATTCAGAATGTGAAGTCCCTCTCCCAATGTTCTTCGACCAGTTCACTTCAAATGACAATTTAAATTTCAGAGACAGTCCATTCCACCTGGAACAAGATTTTGAATCGTGTAAATGGGACGTAGACAGCTACTTTGAGGATGAACTAGACTGA | 870 | 0.4793 | MRETKIITKKFVKSEFLNGARRVVRISVTDQNATDTSSGDDEYEHFQPRRMRRIVNEIRIEKWSDFPANREAYGGGMSTSCSKQRSRNNTSGKARPGKSDQVEAKVKKYRGVRLRPWGRWSAEIRDPARRQRLWLGTFDTAEEAAVSYDRAAIRIKGANALTNILQPPPEIAETVEESVSTSMDNNIELFKEPHVSSPTSVLRFQSLEEPKTEPREAEAEPYFQDSNLWFSSDSPFCDRYSECEVPLPMFFDQFTSNDNLNFRDSPFHLEQDFESCKWDVDSYFEDELD | 289 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele42g1176 | 289 | Pfam | AP2 domain | 108 | 157 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele42g1176 | 289 | MobiDBLite | consensus disorder prediction | 73 | 101 | - | - | |
| Lele42g1176 | 289 | SMART | rav1_2 | 108 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele42g1176 | 289 | PRINTS | Ethylene responsive element binding protein signature | 131 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele42g1176 | 289 | PRINTS | Ethylene responsive element binding protein signature | 109 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele42g1176 | 289 | FunFam | Ethylene-responsive transcription factor 2 | 107 | 166 | - | - | |
| Lele42g1176 | 289 | MobiDBLite | consensus disorder prediction | 75 | 96 | - | - | |
| Lele42g1176 | 289 | CDD | AP2 | 107 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele42g1176 | 289 | Gene3D | AP2/ERF domain | 107 | 165 | IPR036955 | GO:0003700|GO:0006355 | |
| Lele42g1176 | 289 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 22 | 216 | - | - | |
| Lele42g1176 | 289 | SUPERFAMILY | DNA-binding domain | 108 | 164 | IPR016177 | GO:0003677 | |
| Lele42g1176 | 289 | ProSiteProfiles | AP2/ERF domain profile. | 108 | 165 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele42g1176 | Lele-ChrLele42 | 24081432 | 24082301 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele42g1176 | 3 | 253 | AP2-EREBP Transcription Factor Family | AT4G27950 | 40.702 | 2.40e-49 | 165 |
Transcription factors information