LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g1163	ATGGAGGAAGGGCAATTTAGTCTGATTAATGAGCTAAACCAAGGGAAGGAGCTAGCAAGGTTGCTCTGTAACCATATAGCATCTTCTTCTTCTTCATCTTCTTCAGCTTCTCATGAGACGAATGAGCTCTTGATTGAGAAAATACTCTTTTCATATGAGAAAGCTCTGAAGATGCTTACAAGTGAAGAAAATGTGAGTGAGGCTAATCCCACCATTAATGCTGATGGGAGCGCCAGATGTGAGGTATTGGACCAAGAAGACAATCACAGAGATGTCTGCAAGAAAAGGAAGATCATGCCTAAATGGTCAGAACAAGTGAAGGTTTGCTCAAGAACCGGGATTGAGGGTTCCTTAGATGATGGATATAGTTGGAGAAAATATGGCCAGAAGGACATCCTCGGAGCTAAATTTCCTAGAGGATACTACAGATGCACTCATAGATTCTTACAAGGTTGTGAAGCAACAAAACAAGTTCAAAGGTCTGATAAAGATCCAACAATATTCGAGGTGACCTACAGAGGAAGACATACCTGCAACAACCAGGCATATTTTAACAAAGCAGCATCATCATCGTCAAAGAAAAATAAGATGGGTTTTAGAGAGAACAACCATCATAATCATCAACAATACCATAAAAGAGAGGAGGAGAAGAAGGAGGAAGGAGAAGAGAAGATGGAACAATCCCTAGTGACATTCTTCAATTTTGAACCAGAACTTGAAGTCAAAATGGACGACATTTTCCCGACATCGAGTGGATTTCCTTGGTCATCAGATAATTACCAGTTCGTGGAAAACTTCATTTCCCCATCAACCTCGGAATCGAACCTTTTTTGTCTGTCACCGTGTCACATGGGAAGTGCAGGCATGGGCCAAAACGTGCAAAGTTCAGAATCTGAAGTGACAGACATAGTTTCAGCCCCAACCTCAGTCACCAATTCGCCTTTGGTGGATTTGGATGTCTTGTTTGAGAAGGAAGATTTTCAATCCACTTTCCCTTTCAACACTTCTGAATTTTTCTCTTCTTAG	1026	0.4123	MEEGQFSLINELNQGKELARLLCNHIASSSSSSSSASHETNELLIEKILFSYEKALKMLTSEENVSEANPTINADGSARCEVLDQEDNHRDVCKKRKIMPKWSEQVKVCSRTGIEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRFLQGCEATKQVQRSDKDPTIFEVTYRGRHTCNNQAYFNKAASSSSKKNKMGFRENNHHNHQQYHKREEEKKEEGEEKMEQSLVTFFNFEPELEVKMDDIFPTSSGFPWSSDNYQFVENFISPSTSESNLFCLSPCHMGSAGMGQNVQSSESEVTDIVSAPTSVTNSPLVDLDVLFEKEDFQSTFPFNTSEFFSS	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g1163	341	Pfam	WRKY DNA -binding domain	119	179	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele42g1163	341	MobiDBLite	consensus disorder prediction	197	223	-	-
	Lele42g1163	341	ProSiteProfiles	WRKY domain profile.	113	181	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele42g1163	341	MobiDBLite	consensus disorder prediction	194	223	-	-
	Lele42g1163	341	FunFam	WRKY transcription factor 53	104	181	-	-
	Lele42g1163	341	SMART	WRKY_cls	118	180	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele42g1163	341	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	7	292	IPR044810	GO:0003700
	Lele42g1163	341	Gene3D	WRKY domain	102	180	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele42g1163	341	SUPERFAMILY	WRKY DNA-binding domain	117	180	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g1163	Lele-ChrLele42	23971852	23973676	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g1163	8	194	WRKY Transcription Factor Family	AT4G23810	45.833	6.64e-47	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele42g1163		WRKY	2e-27	CL0274