Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1162 ATGTTACATGGAATTGCAGAGGTGAGCAGTATCGAGTGGGAGTTCATAAACATGTCAGAGGAAGAAGAAGATCTCATCCACAGAATGTACAAACTCGTTGGAGACAGATGGAGTCTGATAGCTGGTAGAATCCCAGGACGAAAAGCTGAAGAGATTGAGAGGTTTTGGATTATGAAGCAGGCGCAAGTGTTTGCTACCAGAAGAGAAAATCTTGGCACATATAAATAA 228 0.4211 MLHGIAEVSSIEWEFINMSEEEEDLIHRMYKLVGDRWSLIAGRIPGRKAEEIERFWIMKQAQVFATRRENLGTYK 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1162 75 Pfam Myb-like DNA-binding domain 18 57 IPR001005 -
Lele42g1162 75 SUPERFAMILY Homeodomain-like 19 60 IPR009057 -
Lele42g1162 75 Gene3D - 19 59 - -
Lele42g1162 75 ProSiteProfiles Myb-like domain profile. 19 56 IPR001005 -
Lele42g1162 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 17 59 - -
Lele42g1162 75 SMART sant 14 62 IPR001005 -
Lele42g1162 75 CDD SANT 17 56 IPR001005 -
Lele42g1162 75 FunFam MYB-like transcription factor 17 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1162 Lele-ChrLele42 23958063 23959561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1162 17 70 MYB Transcription Factor Family AT5G52600 50.000 2.25e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g1162 Myb_DNA-binding 6.9e-07 CL0123