Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1155 ATGATGGCTCGTTCACAAAATCCTCCCGCTGAAGTTTACTTCAGCCATTTCTCCCTTCCTCATCCATCGCACCATTGTCGCCGGCGACCACAAGCTCCAAGGAACCATACTGTACTAAACAAAATTGTTGGTATTGCTATGCCCGCAAAACTCTTATCTCAACTTCATCTTATCCAAGCTTCTTCCTTCGCTCGTTTCCCTTCCATGAAGCTTGGAGCCTCCATTCCAACGTCCCGACCAGTCCCCATTTTCTCTCGTATCTTCCCCTTCAGGCTCAAGTACCTGGCGTTGGAGTCTCGTGCTGTACGGAATGAACTTCTCGGTGTACGGCGATTCTCGACTCGGTCGTTTGCTGGGAGGGCTGGCTCGAGGTCCGAGTTCAACCGGGGGAATCGGGATACAGAAAGGGTCAGGGTTCCTAAGAGCTTGATTGAGGATGAGGCTAAACTCAGTGACTGGGTTGACGATTTGAAGACCGATTCTTATCGAGGTCGACTCACCAGCGAAGAGGATGACTCGGATAGGGAGAGTAGTCGCAGTGGAGGGAGGAGTGGAGCACCTGTTTCGATGAAAGGGAGCAGGGATCGTGGCTCGAGCAGATTTGGTGAACCAACACGGAGGAGAACTCGGGATACATTTGAGTCGTTTTCACGGAATTCTCGTATGAGCCGGAGATTTGAGGACGATGACGATGAGGATGGAAATGAATTCCGTTCTTCGAGAAGCGGTAGAGTGTCCGAAGGTCGGAATGTGAAATCTATCTTGGGGAAGAGAAGTGGTGAGGAGGTGCGAGGAGGGAGAAGGGATGGAAGGAGAAAATCGTATTCGATTGGTGTGGGTGATGCTGATGAAGATGAACAGGGGGCAAAGAAGTTCATGGGACGTTTTGGAGATCTTATTAGTGAAGAAGACAGTGACTCTGAAGATACTGCGGATGAATATGGTGATAATGATTTACTGAAGAAGACTTTAGATTCTCAGATGGGTCGAGAAAAGGAGCTGAAGAAGAGCAGTCCAACAAGAGGTTCTCCCGAGAGATCTGATAATTATTTAAGTGAGACCAGATTTGATCAATGTTCAATCTCGCCTTTATCATTGAAAGGAGTCAAGGCTGCTGGATACGAGAAAATGACTGTTGTGCAGGAGGCAACTCTTCCAGTAATTCTCAGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACAGGAAAGACTGTTGCCTTTTTGCTTCCATGTATTGAAGTTGTTGCGAAGTCACCTCCAATTGAACGTGATCAGAAGCGACCTCCAATCCTTGTGCTTGTCATATGCCCAACTCGGGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTGAAGTACCACCCTTCCATTGGCGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCCACTCCTGGAAGGCTTAGAGACCATATTGAGAATACAGCAGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTCCTTGTGCTCGATGAAGCTGATCATCTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTTCCTAAACAAAGACAAACTCTCATGTTTTCTGCCACCGTTCCAGAAGAGGTCCGTCAAGTCTGCCATATTGCGTTGAGAAGGGATCATGAATTTATCAATACAGTTGAAGAAGGTAGTGAGGAGACACATTCACAGGTTAAACAAATGCATTTAGTTGCACCATTAGACAAACATTTCTCCTTGCTCTACGTTCTTCTTAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTTGTTGCTGACCTTCTTGGCGAGTTGAACATGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAGCTATAGAACCAGGGTCTCTGAGGAGTTTCGGAAATCAAAGGGCCTTATCCTTGTAACTTCAGATGTATCTGCCCGCGGAGTTGATTATCCAGATGTCACTCTGGTTATACAGTTGGGTTTGCCAGCTGATAGAGAACAGTATATCCACCGACTGGGTCGTACAGGGCGGAAAGGTAAAGAAGGGCGAGGCGTATTGTTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACCGTAAAGAATTTGCCTATTGCAAAAGCTCCAGTACCTTCAACGGATCCTGACACAAAGAAAAAGGTGGAAAGGGCGCTATCCCATGTGGAGATGAAGAACAAAGAAGCAGCATATCAGTCGTGGCTTGGTTACTACAATTCAAACAAGAAAGTGGGGAAAGACAAGTATAGGCTGGTGGAGCTTGCAAATGAATTCAGTAGAAGCATGGGGCTTGATAACCCTCCGGCTATTCCAAAGCTAGTCCTTGGCAAGATGGGCCTCAGAAATATACCTGGTTTACGTTCCAAATAG 2469 0.4662 MMARSQNPPAEVYFSHFSLPHPSHHCRRRPQAPRNHTVLNKIVGIAMPAKLLSQLHLIQASSFARFPSMKLGASIPTSRPVPIFSRIFPFRLKYLALESRAVRNELLGVRRFSTRSFAGRAGSRSEFNRGNRDTERVRVPKSLIEDEAKLSDWVDDLKTDSYRGRLTSEEDDSDRESSRSGGRSGAPVSMKGSRDRGSSRFGEPTRRRTRDTFESFSRNSRMSRRFEDDDDEDGNEFRSSRSGRVSEGRNVKSILGKRSGEEVRGGRRDGRRKSYSIGVGDADEDEQGAKKFMGRFGDLISEEDSDSEDTADEYGDNDLLKKTLDSQMGREKELKKSSPTRGSPERSDNYLSETRFDQCSISPLSLKGVKAAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPCIEVVAKSPPIERDQKRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVEEGSEETHSQVKQMHLVAPLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNMNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKEGRGVLLLAPWEDFFLSTVKNLPIAKAPVPSTDPDTKKKVERALSHVEMKNKEAAYQSWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1155 822 Pfam Helicase conserved C-terminal domain 602 707 IPR001650 -
Lele42g1155 822 MobiDBLite consensus disorder prediction 254 288 - -
Lele42g1155 822 Gene3D - 316 569 IPR027417 -
Lele42g1155 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 722 IPR027417 -
Lele42g1155 822 SMART ultradead3 373 586 IPR014001 -
Lele42g1155 822 Gene3D - 577 801 IPR027417 -
Lele42g1155 822 MobiDBLite consensus disorder prediction 164 288 - -
Lele42g1155 822 MobiDBLite consensus disorder prediction 301 351 - -
Lele42g1155 822 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 749 IPR001650 -
Lele42g1155 822 CDD DEADc_MSS116 361 570 - -
Lele42g1155 822 Pfam DEAD/DEAH box helicase 379 556 IPR011545 GO:0003676|GO:0005524
Lele42g1155 822 SMART helicmild6 626 707 IPR001650 -
Lele42g1155 822 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 568 IPR014001 -
Lele42g1155 822 MobiDBLite consensus disorder prediction 196 228 - -
Lele42g1155 822 MobiDBLite consensus disorder prediction 314 351 - -
Lele42g1155 822 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 354 382 IPR014014 GO:0003724
Lele42g1155 822 PANTHER RNA HELICASE 331 752 - -
Lele42g1155 822 CDD SF2_C_DEAD 583 716 - -
Lele42g1155 822 MobiDBLite consensus disorder prediction 164 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1155 Lele-ChrLele42 23889029 23895328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1155 345 735 Eukaryotic Initiation Factors Gene Family AT3G19760 29.000 1.22e-45 167