Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1151 ATGTCTAGGTCTACTTGTTATCCACATGGTGTATCTACATTGGATCTACCTTTCAATATTTGTGGCTGGCACATGCTTGATACTTGCTTGAAGCTACTTACTAAGATAAGTTTTATATTCCTATGTAGGTTTGATGATTGGAGTTCAGAATCATCATCTACTACTGAGCAGAAAAATTCTAGCGATGATGGGTATCATGGAAGAAAACTGAGACCAAGCGTAAGCGCTGTTTTAGATAGCATCAAAAGAAGACTTGAGAATGGGTCTGATAAGATAAAAAACTTGAAAAAATCCTCAACTGTTCATCCTATAAGTGATAGACCGCCCAAGACATTGGCTCGTAGAAGCAGAAGCAAAATTCTTGATCCCCAGGGGTCGTTCCTTCAGAAATGGAACAAAATATTTGTAATCACATCTGTGATGGCTGTCTCTGTGGATCCACTGTTCTTTTACATCCCAGTGATTGTAGACACAGACCAATGCCTTAAGTTGGATGGAAACTTGCAGATTATCGCTTCTGTTCTTCGTACATTCTTTGATCTTTTCTACGTTCTTCACATAATCTTTCAGTTTCGAACTGGGTTTATTGCTCCTTCTTCTCGGGTATTTGGAAGGGGCGAGCTGGTTAATGATCCTCGGGCTATCATGAAAAGATACTTATCTTCATACTTTATCATCGATGTTCTATCAATTATTCCACTTCCACAGGTGGTTGTCTTATTTGTCATTCCAGAATTGAAGAACTCAGTTCCATTTGTGGCGAAGGACCTGTTGACATATATGATCTTAATCCAGTATGTGCCGAGACTCTGGCGAATTTACCCATTATTTGAAGAAGTAACAAGAACTTCTGGCATCCTCACAGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTGTATATGTTGGCAAGTCATTTGGTTGGAGCTTTTTGGTACCTGTTTTCGGTAGAATCAGAGCTTCGGTGCTGGCGCAGAGCATTGAAAACTACAGAATATAATGATAATGAGCATCTGAGCTGTCCTATCAAGAATGCAAATGTTACTTCACTTCTCACTAATTCCTGTATTGTTGTTGATCCTTCTGAAATCACCAACTCAACAACCTTCAATTTTGGAATATATGCCGATGCTCTACAATCTGGTGTGGTTAAATCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTCTGGTGGGGCTTGCGCAATTTGAGTTCTGTTGGACAGAACCTTGCGACAAGTACTTATGTCGGGGAGATAATCTTTGCTATTGGCATTGCCGTCTTTGGATTAGTTCTGTTCTCTTTGCTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTTGAGGAGATGCGAGTCAAAAGGAGAGATGCAGAGCAATGGATGGCCCACCGCATGCTTCCTGAGAACTTAAGGAAAAGAATTAGACGGAATGAACATTACAGATGGCAAGAAAATCGAGGTGTTGAAGAAGAAGCGTTGATTCGCAACCTTCCTAAAGATCTTAGAAGGGACATAAAGCGTCATCTTTGCTTGGCTTTACTTAAAAAAGTGCCAATCTTTGAGAAAATGGATGAACAATTGTTGGATGCAATGAGTGATAGATTGAAACCAATTCTTTACATAGAGAAGAGTTACATTGTTCGTGAAGGAGATCCAGTCGATGAAATGCTCTTCATTATGCGAGGAAAGCTCGCTACTACAACAACAAATGGAGGAAGAACTGGTTTCTTTAACTCCTCAGTTCTCCAAGCTGGTGACTTCTGTGGAGAAGAGCTTCTGACGTGGGCCTTGGACCCCAATACCTCTTCAAATCTTCCCATTTCAACAAGAACAGTGGAATCCATATCAGAAGTTGAAGCTTTTGCTCTCATGCCTGATGACTTGAAGTTTTATTCCTTGCAATGGAGGACATGGGGTGCCTGTTTCATGCAAGCAGCTTGGCGTCGCTACTGCAGAAAAAAGATAGAGAGGTCATTGCGTGAAGCAGAAGAAAGACTGAAAGATGCTTTGGCCAATGAGAATGGATCATCATCAACACCAAGTCTTGGTGCCACCATTTATGCATCAAGATTCGCTACCAACGCCTTACGAAACTTGCGACAAAACAGCCAACACAACAGCAGAATGACACACAGATTGCTGCCTCAGAAGCCATCTGAGCCTGATTTTACTTCTCAAGGTAGCTAG 2208 0.4108 MSRSTCYPHGVSTLDLPFNICGWHMLDTCLKLLTKISFIFLCRFDDWSSESSSTTEQKNSSDDGYHGRKLRPSVSAVLDSIKRRLENGSDKIKNLKKSSTVHPISDRPPKTLARRSRSKILDPQGSFLQKWNKIFVITSVMAVSVDPLFFYIPVIVDTDQCLKLDGNLQIIASVLRTFFDLFYVLHIIFQFRTGFIAPSSRVFGRGELVNDPRAIMKRYLSSYFIIDVLSIIPLPQVVVLFVIPELKNSVPFVAKDLLTYMILIQYVPRLWRIYPLFEEVTRTSGILTETAWAGAAYNLFLYMLASHLVGAFWYLFSVESELRCWRRALKTTEYNDNEHLSCPIKNANVTSLLTNSCIVVDPSEITNSTTFNFGIYADALQSGVVKSTTDFPQKFFYCFWWGLRNLSSVGQNLATSTYVGEIIFAIGIAVFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMAHRMLPENLRKRIRRNEHYRWQENRGVEEEALIRNLPKDLRRDIKRHLCLALLKKVPIFEKMDEQLLDAMSDRLKPILYIEKSYIVREGDPVDEMLFIMRGKLATTTTNGGRTGFFNSSVLQAGDFCGEELLTWALDPNTSSNLPISTRTVESISEVEAFALMPDDLKFYSLQWRTWGACFMQAAWRRYCRKKIERSLREAEERLKDALANENGSSSTPSLGATIYASRFATNALRNLRQNSQHNSRMTHRLLPQKPSEPDFTSQGS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1151 735 FunFam Cyclic nucleotide-gated ion channel 1 453 517 - -
Lele42g1151 735 Gene3D - 135 450 - -
Lele42g1151 735 SUPERFAMILY cAMP-binding domain-like 455 656 IPR018490 -
Lele42g1151 735 Coils Coil 78 98 - -
Lele42g1151 735 SMART cnmp_10 526 661 IPR000595 -
Lele42g1151 735 CDD CAP_ED 526 630 IPR000595 -
Lele42g1151 735 MobiDBLite consensus disorder prediction 49 68 - -
Lele42g1151 735 FunFam Cyclic nucleotide-gated ion channel 1 524 642 - -
Lele42g1151 735 Gene3D Helix hairpin bin 453 517 - -
Lele42g1151 735 ProSiteProfiles cAMP/cGMP binding motif profile. 526 610 IPR000595 -
Lele42g1151 735 Coils Coil 659 679 - -
Lele42g1151 735 Pfam Ion transport protein 131 454 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele42g1151 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 730 - -
Lele42g1151 735 SUPERFAMILY Voltage-gated potassium channels 122 448 - -
Lele42g1151 735 MobiDBLite consensus disorder prediction 708 735 - -
Lele42g1151 735 Gene3D Jelly Rolls 524 643 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1151 Lele-ChrLele42 23860572 23864521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1151 43 732 Ion Channels AT5G53130 61.964 0.0 877