Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1148 ATGGAGGACTCTATCGCCACCACTAAGGCCTACAATCTCTTCGTGAAGCTCTTGGACGGAAAAACCCTAACCCTAAAATTCCCATCTCCTGTTCTTTACGCCAATTCCATTAAGGATAGCATTTTCGAGGTTACGGGAATCCCCACAAAACAACAGCGTCTTGTTACTGGCGTCCAAGACCTCAACGGTAACGAATCTATAATCTCTTGCTCGCCGGAAGGCGGACATGTGTTCCCCACCGTCCATCTGCTGCTGCGGCTTGACGGTGGTAAGGGAGGGTTTGGATCGCTTTTGCGTGGTGCAGCCACGAAGGCTGGGCAGAAGAAGACGAACAACTTCGAGGCTTGCAGAGACATGAGTGGCCGCAGGTTGAGGCACGTAAACGCGGAGAAGAGATTGGAGGAGTGGAAGGCGGAGGAGGCGGAGAGGAAGATGGAGAAGATTGCGGAAGAGTTTTTGAAGAAGCAGGCGAAGAAGGGTAAGAAGGGTGTGGGTGATGGCGAGGCGCACAAGTATGTGGCGAAATATAGGGAGGAGTCTGAACGGTGCACTGCTGAGGTTGCCCAGTCGGTGAAGGAGGCTTTGATGTCTATCAATTGCAAGAGAAAGGTTTCAGATTTTGCAAAAGACGGAGCAGATGCAAAGAAGATGAAGATATGGATGGGAAAGAGGAAATTAAATGAAAGCGATAGTGATGATTCTGATGAGGATGGAAGCGACGATGAAGAAGAAAATGAGAAATCAACTGTATTAAATAATGGGACTGACTCAGACTCAAATAAGGCTGAAGGTAGTTCAGGTTCAGTAACTGGTGGGAAACAGGATGGTGAATCTTCTGTGGCAGGCTCAAGTGGAAGTTTCTCTGAAGAAGAGAAAGAGACTGTTCTAGAAGGAAAAATGGACTCTAGCAATTGTTCTAACATTGAATCTCTCCAGAACATTACGGGCAAATTGGTTGAACCTGTGATATATGATAAGATGGGAAATGGTGTCACTATGCCTGTTTTGAAATCTGCAGCTTTGCGAATTGATGCTGAAGAAGATGGAAAGCAGGATTCTGGTGAAGCCGACAGGCTTGATTCAGCAGTTGCTCAAGCCACAAATCTTATAAGCTCACAGCATGTGATGGGTGCAAGCAAATCAAATGATATTGAAACTGATGGATTGTTTGAGCATAAAGTGTCTTCTCATGAAGAAACTCACACAAGTGCTGGTGCTCAGAAAATAGAGCCTTTGAATTTTGATGCATTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCCTGGAAAGGTTGAAGTCCGAACTGCAGGCACGCGGGTTAAAATGTGGAGGCACATTGCAGGAGCGTGCTGCCAGGCTTTTCCTTCTAAAATCGACCCCACTGGATAAACTTCCTAAAAAGTTACTTGCCAAAAAATGA 1419 0.4609 MEDSIATTKAYNLFVKLLDGKTLTLKFPSPVLYANSIKDSIFEVTGIPTKQQRLVTGVQDLNGNESIISCSPEGGHVFPTVHLLLRLDGGKGGFGSLLRGAATKAGQKKTNNFEACRDMSGRRLRHVNAEKRLEEWKAEEAERKMEKIAEEFLKKQAKKGKKGVGDGEAHKYVAKYREESERCTAEVAQSVKEALMSINCKRKVSDFAKDGADAKKMKIWMGKRKLNESDSDDSDEDGSDDEEENEKSTVLNNGTDSDSNKAEGSSGSVTGGKQDGESSVAGSSGSFSEEEKETVLEGKMDSSNCSNIESLQNITGKLVEPVIYDKMGNGVTMPVLKSAALRIDAEEDGKQDSGEADRLDSAVAQATNLISSQHVMGASKSNDIETDGLFEHKVSSHEETHTSAGAQKIEPLNFDAFNSAAELEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1148 472 MobiDBLite consensus disorder prediction 250 289 - -
Lele42g1148 472 PANTHER SPLICING FACTOR SF3A-RELATED 12 471 - -
Lele42g1148 472 Coils Coil 124 158 - -
Lele42g1148 472 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 159 IPR024974 -
Lele42g1148 472 Coils Coil 418 438 - -
Lele42g1148 472 SUPERFAMILY Ubiquitin-like 11 91 IPR029071 -
Lele42g1148 472 Pfam Replication stress response SDE2 C-terminal 399 471 - -
Lele42g1148 472 Gene3D - 4 92 - -
Lele42g1148 472 MobiDBLite consensus disorder prediction 225 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1148 Lele-ChrLele42 23843656 23846008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1148 412 471 C2H2 Transcription Factor Family AT5G06160 51.667 2.68e-10 60.5