Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1147 ATGATACTTAAGCGGACAATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAGGATGGCGAGGACTACGGGTGTACATCGGTTCCGAAGAAACGGAAGGTTAATGAGTTTTATTCTCTTGGTATGCCGGGCGAGGCTGAAGGTTTCAGCAGCGGTTCAGGGTCGTGGTGCAGTGAAGGATCGCATTGGGCTAGTGAGGTTCTATCGAATTCAAATTCTACGCCATTGAATAGTAGAACAGCAATGGAGCAAGGTTCTGAAAGGATTCGGCCTCCACTATTGCGGTCGTCTCGTGGTCGCTCTCAAACGCTTCCATCGAGGTTCAATGATTCTGTTCTCGGTACATGGAGGAACCGGGGAATCAAAGTGGAGGACGCAGACTCCAGCTTTGAAGATGATAATATTCTAGTTGAAGATAGGGAGGGGGTTAGTGGATTGGGATTTGTAAAACAGGGTAAGGGAAATAACTATGGCTCCAAAAAGTCGAAGTATTATTCATATCCCAACATGGATGGGGAGGAATTAGGATTCGACGACTCAGGTTTAAACAATTTTGACCACCGGAAGCTTACAAATTCTGTTAGTACTACGAGAACATCAATTAATGTAAATCGTTCTTCAGCAGTTAAAACCGAGAGTTATACGTCTGGTTTAAGTTTTGAGGGTGTGGACCAAAAGCTTGATCGAAATGCTGCAAAAAGTAAGGATATCTATAAACCGGAGGATTTTGCTTTGGGTGACATCGTTTGGGCTAAGTGTGGAAAGAGATATCCAGCATGGCCTGCTGTAGTGATTGATCCTATCTTGCAAGCTCCGAAGTCCGTTCTGAGCTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGATATTCCCCTTCGCGGAATTCATGGCCAGGTACAGATTCCAGGGGCAGACTCGGCTGTACAAGAGCAAACCGAGTGACTTTCAGATCGCACTGGAGGAGGCATTGTTGGCAGAAGATAGTTTTCTGGATTCACATATGGGAGCTGAGCAGATTACAAATGCAGAAGCCCATCCCAATGGGTTTATGGAGGCTACAAGTTCATATGTTGATCCAGAATATGGCTCTCAAGACCAGGATATGAGACCTTGTGCTGGCTGTGGTCTGATTTTGCCCTGCAAAACCATGAAGAAGATGAAGGATTCCAATTCTTCAGCTCAACTTTATTGCAAACTTTGTGACAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAACAGATTTGGCACCATTCAGATGGTGGGAATTGGGTGTGTTGTGACGGTTGTAATGTTTGGATTCATGCTGAATGTGCTAAAATATCCAGTAAACTTTTTAAGGATCTGGAACATACAGATTACTATTGTCCAGATTGCAAAGCAAATTTCAACCGTAAATTTTCTGCATCACAAACGTGCAAGCCAAAAATCAAATCAACAGAAAATAGCCAAAAGCCTGTTGTACCTGATAAGGTAACAGTGGTGTGCAACGGCATGGAAGGGTATTACATTCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGTTCATGTGGGGTGCGAAAGCAGACACTGAGTGAATGGGAACGACATACGGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACAATGCTTCCTCTTGAAAAATGGATCAACAGCAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGAGCAAAGAATGTCAAGGATTTTACTTCTTGGGTCTGTAGAGTGTGCGAAACCCCAGATGTTGAGAGAGAGTGTTGCCTTTGTCCTGTTAAAGGTGGAGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACGTGTGCTTGGTTCCGGCCTGAAGTTGGATTCTCAAACCATGAGACAATGGAGCCCGCCTTTGGAATCCTTAAAATTCCTCCAAGTTCCTTTTTGAAGACCTGTGTTATCTGTAAACAAAGCCATGGATCCTGTGCAAGTTGTTGCAAGTGTGCTACTCATTTTCATGTGACGTGTGCATCTAGGGCCGGATACAGCATGGAATTGCATTCTATGGAGAAGAATGGGGTTCAGATAACAAAGAAGTTAATATATTGTGCATTCCACAGGCTTCCAACCCCAGATTCCGTAATGGTTATTCATACTCCCTTGGGGGTCTTCTCTCCCAGAACTTCCCTGCAAAATCATAAGGGATGCTTCAAGGGTTCGAGGCTGGTATCATCAAAAAACATAGAACTTCTTGAATCTTCATCCTCTGAGACTAATGAATTGGAACCACTGTCTGCTGCAAGATGTCGTGTTTATAGAAGATCTTCCAAGGACTCTGAAGATTCTGAAGTATTTACTTCGTTCAAGGAACGTCTTGACCATTTGCAGAAAACTGAAAATCTTCGAGTTTGCTTTGGAAAATCGGGTATACATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGCTGAGTACCGTGGTGAGCAGGTAAGACGAAGTGTTGCTGATATGAGGGAGGCTAAGTATCGTTCAGAAGGAAAAGACTGTTATCTGTTCAAGATCAGTGAAGAAGTGGTCATTGATGCGTCACATAGGGGAAATATAGCACGCCTGATAAACCACTCTTGCATGCCTAACTGCTATGCAAGGATTATGAGCATGGGCGCTGAGGAGAGCCGGATTGTTCTTATTGCCAAGACTCAGGTTTCAGCTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCGGACGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGTAAAGCCCCCAATTGTAGGAAATTTATGAATTAG 2898 0.4372 MILKRTMKIEMPNLKRCKLEEQDGEDYGCTSVPKKRKVNEFYSLGMPGEAEGFSSGSGSWCSEGSHWASEVLSNSNSTPLNSRTAMEQGSERIRPPLLRSSRGRSQTLPSRFNDSVLGTWRNRGIKVEDADSSFEDDNILVEDREGVSGLGFVKQGKGNNYGSKKSKYYSYPNMDGEELGFDDSGLNNFDHRKLTNSVSTTRTSINVNRSSAVKTESYTSGLSFEGVDQKLDRNAAKSKDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFAEFMARYRFQGQTRLYKSKPSDFQIALEEALLAEDSFLDSHMGAEQITNAEAHPNGFMEATSSYVDPEYGSQDQDMRPCAGCGLILPCKTMKKMKDSNSSAQLYCKLCDKLRKSKQYCGICKQIWHHSDGGNWVCCDGCNVWIHAECAKISSKLFKDLEHTDYYCPDCKANFNRKFSASQTCKPKIKSTENSQKPVVPDKVTVVCNGMEGYYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWINSRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPSSFLKTCVICKQSHGSCASCCKCATHFHVTCASRAGYSMELHSMEKNGVQITKKLIYCAFHRLPTPDSVMVIHTPLGVFSPRTSLQNHKGCFKGSRLVSSKNIELLESSSSETNELEPLSAARCRVYRRSSKDSEDSEVFTSFKERLDHLQKTENLRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDASHRGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTQVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1147 965 SUPERFAMILY SET domain 817 962 IPR046341 -
Lele42g1147 965 SUPERFAMILY FYVE/PHD zinc finger 430 489 IPR011011 -
Lele42g1147 965 MobiDBLite consensus disorder prediction 72 88 - -
Lele42g1147 965 CDD SET_SETD1-like 812 961 - -
Lele42g1147 965 FunFam Histone-lysine N-methyltransferase 797 965 - -
Lele42g1147 965 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 730 IPR013083 -
Lele42g1147 965 SMART PWWP_4 247 316 IPR000313 -
Lele42g1147 965 Pfam PWWP domain 250 347 IPR000313 -
Lele42g1147 965 CDD PHD_TCF19_like 433 483 - -
Lele42g1147 965 Pfam PHD-finger 432 485 IPR019787 -
Lele42g1147 965 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Lele42g1147 965 Pfam PHD-finger 581 609 - -
Lele42g1147 965 SUPERFAMILY Tudor/PWWP/MBT 240 357 - -
Lele42g1147 965 SMART set_7 823 946 IPR001214 GO:0005515
Lele42g1147 965 Pfam SET domain 834 939 IPR001214 GO:0005515
Lele42g1147 965 ProSiteProfiles SET domain profile. 823 940 IPR001214 GO:0005515
Lele42g1147 965 ProSiteProfiles Zinc finger PHD-type profile. 417 486 IPR019787 -
Lele42g1147 965 SMART PostSET_3 949 965 IPR003616 -
Lele42g1147 965 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 489 IPR013083 -
Lele42g1147 965 Gene3D - 235 355 - -
Lele42g1147 965 ProSiteProfiles Extended PHD (ePHD) domain profile. 614 729 IPR034732 -
Lele42g1147 965 MobiDBLite consensus disorder prediction 72 110 - -
Lele42g1147 965 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 965 IPR025780 -
Lele42g1147 965 Gene3D SET domain 762 965 IPR046341 -
Lele42g1147 965 PANTHER PHD FINGER PROTEINS 13 466 - -
Lele42g1147 965 FunFam Histone-lysine N-methyltransferase 612 731 - -
Lele42g1147 965 Pfam PHD-zinc-finger like domain 616 728 - -
Lele42g1147 965 SMART PHD_3 673 729 IPR001965 -
Lele42g1147 965 SMART PHD_3 432 484 IPR001965 -
Lele42g1147 965 ProSiteProfiles Post-SET domain profile. 949 965 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1147 Lele-ChrLele42 23834765 23842398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1147 385 457 EF-hand Containing Proteins AT5G28340 57.534 5.19e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele42g1147 zf-HC5HC2H_2 4.2e-28 CL0390