Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1137 ATGTTTTTAGGTGATAGAATGGAATCGAGTAGTCTTGATAGTACTGTATCATCCTTGACTATGGATGATGATGAGCATATTCCCCATCAGTTTTCTTCGATCACGACGAAGCTGCATAACAATGGCCCTGGTACTACCAGCGTCCACGAGCTGCTTGAATGCCCCGTTTGCACCAGCTCAATGTATCCTCCAATCCATCAGTGTCACAATGGGCATACACTTTGTTCAACTTGTAAGACAAGGGTACACAATCGATGTCCGACCTGTAGACAGGAACTTGGGGATATAAGGTGTCTGGCACTGGAGAAAATAGCAGAATCACTTGAACTGCCTTGCAGATACGGCTCGCTTGGTTGTCCAGAGATATTTCCCTATTATAGCAAACTCAAACATGAGTCTATTTGTAACTTCAGACCATACAACTGCCCGTATGCTGGGTCAGACTGTTCTGTTGTCGGGGATATTCCATACCTCGTTGCTCATTTACGGGATGACCACAGGGTCGATATGCATTCGGGATGCACATTTAACCATCGCTATGTCAAGTCTAATCCTGTGGAAGTAGAAAATGCAACATGGATGTTAACCGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTTTACATGGCATTCCTTCGGTTCATGGGCGATGAAAGAGAAGCTCGGAGCTACTGCTACAGTCTGGAGATAGGAGGGAATGGTCGAAAACAAATATGGGAGGGCAGCCCAAGAAGCATAAGAGACAGCCATAAGAAAGTTAGGGACAGCCATGATGGCCTCATTGTATACAGAAACATGGCGCTTTTCTTCTCAGGTGGGGACAGGAAAGAGTTGAAGCTACGAGTCACAGGAAGGATCTGGAAAGAACAGCAAAATCCTGAAGGTGGAGTTTGCATACCCACTCTCTGTAGTTAA 951 0.4564 MFLGDRMESSSLDSTVSSLTMDDDEHIPHQFSSITTKLHNNGPGTTSVHELLECPVCTSSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYGSLGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYCYSLEIGGNGRKQIWEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPTLCS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1137 316 FunFam E3 ubiquitin-protein ligase SINAT3 104 162 - -
Lele42g1137 316 CDD Sina 168 296 - -
Lele42g1137 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
Lele42g1137 316 CDD RING-HC_SIAHs 52 90 - -
Lele42g1137 316 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele42g1137 316 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Lele42g1137 316 FunFam E3 ubiquitin-protein ligase SINAT5-like 163 295 - -
Lele42g1137 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 295 IPR008974 GO:0005515
Lele42g1137 316 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Lele42g1137 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 301 - -
Lele42g1137 316 SUPERFAMILY RING/U-box 48 94 - -
Lele42g1137 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 162 IPR013083 -
Lele42g1137 316 SUPERFAMILY TRAF domain-like 107 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1137 Lele-ChrLele42 23758429 23761002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1137 3 302 C3H Transcription Factor Family AT2G41980 69.205 4.01e-157 439