Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1130 ATGTACCAAAAATCGAGCTCCAGGAAAAGGAAGAATGCTGTGGTCCGCAGGGAATCGGAGTGGGAAGTGTCAGATTCCGAGTTGAAATGGAAATCGGTCCGAGTTGGAGAGTTGAAGCTCTCGGCTAGCTATAGTTCGAAGAAGAAGAAAATGAGTGATGGTAGAAGACTAAATAACACCGTGAAGACAGTGTTCAGGGTGAATTCCGATGAAGAGCGGGGACGGAATCATTCCTCGATGGAGAAACCATCCATGGTTACGGATTTGCACAGGAAAACCAAGAAGGGTGGAAGTTTGATGTGTCATCAGTGCCAGAGGAGTGACAAGAATGGTGTGGTTTTCTGCTTAAAGTGTGGCAGAAAACGCTACTGTTATGATTGCCTCAAGAAGTGGTACCCAGGAAAAACACCAAAGGAAGTTGAGAATGAATGCCCATATTGTTGTGGCAATTGCAATTGTAAAGCTTGCCTGCGAGAGGTTCCTGTGCTAAGGAATCCAGAAATTGATGACAATGCCAAAATAGAACGACTGCTGTATTTACTATACAATGCTCTGCCCATTCTTAGGCATATTCATAAGGAGCAGAACTCTGAGCTAGACACTGAAGCAAAAAGAAGAGGTAATCGACTGCAAGAAATTAACATAACAAGAACAAAGTTAGATGGAAGTGAGCATTTAATTTTCTCGTGCCTTGGTTATGGGTCCATGATGAATGGCAGTGACAGTTGCAACACATCTGTTGTTGGATTATACCGAAGCTGTCCCAACCCCAGTTGCTCTTACGACCTGTGTCTTGCCTGCTGTCAAGAGCTTAGAAATGGTTGCCAACCTGGAGGCATAGAAGCTGAAACATTGCATGAAAAGTTTGTAGAGAAAGATGGGAACCAAGATTCTACAAGGACTTGTAGTAAGACTCATACAACAGATAGATATGGTTGGGAAAGCCAACTTTTACCTAATGTTTTTGAAATTCAAACTGATGGAACCTCTACATTTCCTGAATGGCGAGTTAATAGAGATGGTAATATTCCATGTCCTCCAAAACAGCATGGAGGTTGTGGCACTGCATTGCTAGAGTTGAGACGCACTTTCAAAGCTGATTGGGTGGTGAAGCTGTTAAAGAATGCAGAGGACCTCACAAGTGACTACAAACCCCTGGACGTTGATGTTTCTGCGAAGTGCTCTTTATGCACTTATGAGGTCAGGCGGGCAGCTTCCAGGGATGATGATCAAGATAATTTTTTATACAGCCCTAATGCCCTTGACATGTCTGATAACGAAGTTGAGCATTTCCAGAGGCACTGGATGAAGGGAGAACCTGTGATTGTGGAGATCAATATTCACCAATTTTTTGCAGGCTACCTAGAGGGTCGAATGCGTAAGGATAGGTGGCCAGAAATTCTGAAATTGAAAGATTGGCCTTCATCAACATCGTTTGAAGAGCGTTTGCCCAGGCATGGTGCTCAATTTCTTACAGCTCTACCCTACAGGGACTACACTGATCCAAAATCAGGTCTTTTGAATCTTGCCAGCAAGCTTCCTCGTTTTTCACTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGGTTTCTTGTTGGTAGAGGTGATTCCATGACAAAACTCCACTGCGATGTGTCTGATGCGGTTAATGTACTGACCCACACAACCAAGGTGAATATAGGTGCTTGGCAACAAGAAAGCATAAAAGAATTGCAGGAGAGATATGCAAAAGAAGACATGCAGGAACTATACTTTGAAGCACATAATGATATTGATGGAAGACCTAAATCAAATGATGGAAAGACTGAGGATGGAGTTAACAGTTTTTCTTCTGGTCGCCAAATAGATGAACATATTTCATCAGCATCGGAAGTCGCAACTGTGAAGCTAGAAATTTCATCAGCATTGGAAGGTTCAACTGTCAAGTTAGAAAGTTCATCAGCATCGGAAGACTCAGCTGTGAAGTTAGAAATTTCATCAGCAGAAGGCTCAACCGTGAAGTTAGAAACAACAGGCACAGAACAATTTGGTGAGAGCAGAAACTGTTCTGCCTCCGACAGAATTGTTGTGGAAAGAAGTCGCTCTTCAGAAGATGATGTTAGTATTATATATGCTGAAGTTTCAGATCATGCCAAGGCTTTCGGACAGAAACGTGAACTGACTCAATCTGCATGTAACTTAACCTCTAGCTGTAAGAGCAACGTTAATGAAAGAACGAGGACTGACTTTCTTGACAATTTGTCTGATGATCCAGAGCCCCAAAAATCAAAACGAAGTCTGGTAAAAGATTCCGCAGAAACTAATCATGAAGCTGCAGTTGTCCATGGCGGCGCTGTTTGGGATATCTTCCGTCGTCAAGATGTACCAAAACTAATGGAGTATTTAAGGACGCATAAGAAGGAATTCCGTCATATCAGAAATCATCCTATAACTTCTGTTATGCATCCCATTCATGATCAGACATTTTTCATTAATGAGAAGCATAAGAAACAATTGAAACGGGAGTTTGGTGTGGAAGCCTGGACTTTTGAGCAACATCTTGGTGAGGTTGTTTTCATTCCCGCTGGATGTCCCCATCAAGTGAGAAATAAACAATCTTGTATAAAGGTGGCACTTGATTTTGTTTCCCCGGAAAATGTTGAAGAATGTTTACGACTAACTGAAGAGTTTCGTTTGCTGCCAAAGAAACACAGAGCCAAGGAGGATAAATTGGAGATTAAAAAGATGACACTTTATGCTGTAAGTTCGGCTGTTAAAGAAGTCAAAGGACTGATGAAGTCTACTGAGTAA 2796 0.421 MYQKSSSRKRKNAVVRRESEWEVSDSELKWKSVRVGELKLSASYSSKKKKMSDGRRLNNTVKTVFRVNSDEERGRNHSSMEKPSMVTDLHRKTKKGGSLMCHQCQRSDKNGVVFCLKCGRKRYCYDCLKKWYPGKTPKEVENECPYCCGNCNCKACLREVPVLRNPEIDDNAKIERLLYLLYNALPILRHIHKEQNSELDTEAKRRGNRLQEINITRTKLDGSEHLIFSCLGYGSMMNGSDSCNTSVVGLYRSCPNPSCSYDLCLACCQELRNGCQPGGIEAETLHEKFVEKDGNQDSTRTCSKTHTTDRYGWESQLLPNVFEIQTDGTSTFPEWRVNRDGNIPCPPKQHGGCGTALLELRRTFKADWVVKLLKNAEDLTSDYKPLDVDVSAKCSLCTYEVRRAASRDDDQDNFLYSPNALDMSDNEVEHFQRHWMKGEPVIVEINIHQFFAGYLEGRMRKDRWPEILKLKDWPSSTSFEERLPRHGAQFLTALPYRDYTDPKSGLLNLASKLPRFSLKPDLGPKTYIAYGFLVGRGDSMTKLHCDVSDAVNVLTHTTKVNIGAWQQESIKELQERYAKEDMQELYFEAHNDIDGRPKSNDGKTEDGVNSFSSGRQIDEHISSASEVATVKLEISSALEGSTVKLESSSASEDSAVKLEISSAEGSTVKLETTGTEQFGESRNCSASDRIVVERSRSSEDDVSIIYAEVSDHAKAFGQKRELTQSACNLTSSCKSNVNERTRTDFLDNLSDDPEPQKSKRSLVKDSAETNHEAAVVHGGAVWDIFRRQDVPKLMEYLRTHKKEFRHIRNHPITSVMHPIHDQTFFINEKHKKQLKREFGVEAWTFEQHLGEVVFIPAGCPHQVRNKQSCIKVALDFVSPENVEECLRLTEEFRLLPKKHRAKEDKLEIKKMTLYAVSSAVKEVKGLMKSTE 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1130 931 MobiDBLite consensus disorder prediction 592 615 - -
Lele42g1130 931 SMART cupin_9 483 893 IPR003347 -
Lele42g1130 931 Pfam JmjC domain, hydroxylase 779 876 IPR003347 -
Lele42g1130 931 ProSiteProfiles JmjC domain profile. 502 893 IPR003347 -
Lele42g1130 931 MobiDBLite consensus disorder prediction 744 769 - -
Lele42g1130 931 CDD cupin_RmlC-like 804 865 - -
Lele42g1130 931 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 443 928 IPR045109 GO:0032454|GO:0033169
Lele42g1130 931 Gene3D Cupin 442 608 - -
Lele42g1130 931 Gene3D Cupin 711 902 - -
Lele42g1130 931 ProSiteProfiles Zinc finger RING-type profile. 101 147 IPR001841 -
Lele42g1130 931 SUPERFAMILY Clavaminate synthase-like 427 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1130 Lele-ChrLele42 23717049 23722666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele42g1130 JmjC 1.7e-15 CL0029