Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1129 ATGAAGATTGAGGTGGGTGTAGGAGGAGAAGGTATGTTGTGGAACGAAGACGAACGAGACATGGGGGTGGCGGTTCTCGGCGCTCGAGCTTTCGATTACTTGGTGAACCACTCAGTTTCAAATGAGAATCTGTTAATGGCCGTCTTCACCGACGAGAATCTCCAGAAGAAGCTCTCGGATCTCGTGGAGCGTCCAAACGTATCGAATTTCACCTGGAACTACGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGGTGTTGCAGAGAACCCAATGAAGCAGAAGAAGACGGATTAAAAGCGACTCTTAGTCTTCGCATGGAAGACGAAGTTCAGCAAAGGATGAGAAAGAGAGTGTTGCAGAAGCTTCACGCAACCTTTGGTGGTTCAGAAGAAGACAATTACGTTCATGGATTAGACCGTGTTACTGATACTGAGTTGTTCTTTCTGGCATCTATGTACTTCTCTTTCCCTCGTGGCCATGGCGGTCCAGGTAAGTGTCTTGCGTCTGGTAAACATTTATGGCTCACAGATGCACAGAAATCTGCAGTTGATTATTGCGTGAGATCGTTTCTGGTTAAATCCGCCGGAATCCAGACCGTCGTTTTGATCCCTACTGACATGGGAGTGGTGGAACTGGGTTCTGTGAAGTTGGTGAAGGAGAACTTAGAATTGTTGCAGGCAATCAAGTCAGAGTTTTCCATTGAATCTACATTTTCAAGGGCTAAGTCGTCAATTCTACCACCGACTCCTGCTCCTGCTCCTGCTCCTCCGGTTCCGGTGACGGCGGAGAAAAGAGATGAACTAACCATCCTTCCGGTTTTAACAGTTTCTGACAAAGTTGAAGTAGTTCCAAAGATTTTCGGGCAGGATTTGAACAAGACGAACCCGGTTCGAACCAACCAGTTCAGAGAGAAACTTGCTATTAGGAAAATGGAGGACAGGCCATGGTTAGGAGGAGGAGGAGGTCAAGGTCATCATCATCATCACCATCACCACTCCAATGGGGTTCATCTTCATCCTCATCCTCATCGGAATGGGGTTCATCCTTCAAGTTGGACAACGGCAGCTAATAATAACTGTCCTGTTGAAACTTATGTTTCTAGACCGTCGGCGGTGACGAGCAATGTGCCGGTTCTTGACCTTGTTAATGGCGTTAACAACTATAACAATGAGCCGCCGCAAAGGAAGGCTCCATCGCAGATTGATTTCTCAGGAGCTACTTCCAGGTCTGCTGTGACGGCTGTGAGACCAAATGGTGGTGAATCAGAGCAATCCGGTGCTGATGCTGCTTCATTCAGGGAGGGGCTGGCACCGGGAGGGGGAGGGGCTGATGAACGGCGGCCGAGAAAGCGAGGAAGAAAGCCTGCGAACGGCAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGACAAAGGCGTGACAAACTGAACCAACGATTCTATGCTTTAAGAGCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCCTCCTTGCTAGGAGACGCCATTGCTTATATCAATGAGCTTCAGGCGAAACTCAAGGCAATGGAAACTGAAAGAGAGACCAGACTCGGAGGAAGCACTTCGAGTGATCATCAATCATTAGATCCCAACAATGTTCAACAATCTCTCTCTCAAGTGGAAGTCCACGCACATCACGATGGGGTCATCGTGAGGGTGATCTCGCCGATCAATTCCCACCCGGTCTCGACAGTGATCAGAGCGCTGAAAGAAGCCCAAGTGAATGTTGTTGATTCGAAGCTTGCCGCCCCGAACGAAGCAGTGTTGCACACATTCGTGATCCAGCCTCAAGGAGCTGATCAGCAGCTGACAAAAGAAAAGTTGATTGCTGCATTTTCCCGCGAATCCAATTCGTCGCAGCCATTTTCGTTGACTGGCCATTAA 1935 0.4873 MKIEVGVGGEGMLWNEDERDMGVAVLGARAFDYLVNHSVSNENLLMAVFTDENLQKKLSDLVERPNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPNEAEEDGLKATLSLRMEDEVQQRMRKRVLQKLHATFGGSEEDNYVHGLDRVTDTELFFLASMYFSFPRGHGGPGKCLASGKHLWLTDAQKSAVDYCVRSFLVKSAGIQTVVLIPTDMGVVELGSVKLVKENLELLQAIKSEFSIESTFSRAKSSILPPTPAPAPAPPVPVTAEKRDELTILPVLTVSDKVEVVPKIFGQDLNKTNPVRTNQFREKLAIRKMEDRPWLGGGGGQGHHHHHHHHSNGVHLHPHPHRNGVHPSSWTTAANNNCPVETYVSRPSAVTSNVPVLDLVNGVNNYNNEPPQRKAPSQIDFSGATSRSAVTAVRPNGGESEQSGADAASFREGLAPGGGGADERRPRKRGRKPANGREEPLNHVEAERQRRDKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMETERETRLGGSTSSDHQSLDPNNVQQSLSQVEVHAHHDGVIVRVISPINSHPVSTVIRALKEAQVNVVDSKLAAPNEAVLHTFVIQPQGADQQLTKEKLIAAFSRESNSSQPFSLTGH 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1129 644 SMART finulus 476 525 IPR011598 GO:0046983
Lele42g1129 644 Coils Coil 509 529 - -
Lele42g1129 644 Gene3D - 464 533 IPR036638 GO:0046983
Lele42g1129 644 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 533 IPR036638 GO:0046983
Lele42g1129 644 CDD bHLH_AtAIB_like 467 531 - -
Lele42g1129 644 MobiDBLite consensus disorder prediction 453 482 - -
Lele42g1129 644 MobiDBLite consensus disorder prediction 395 482 - -
Lele42g1129 644 MobiDBLite consensus disorder prediction 324 365 - -
Lele42g1129 644 MobiDBLite consensus disorder prediction 529 548 - -
Lele42g1129 644 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 242 IPR025610 -
Lele42g1129 644 FunFam Transcription factor bHLH13 463 534 - -
Lele42g1129 644 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Lele42g1129 644 PANTHER MYC 40 628 IPR045084 GO:0003700|GO:0006355
Lele42g1129 644 MobiDBLite consensus disorder prediction 395 430 - -
Lele42g1129 644 MobiDBLite consensus disorder prediction 333 354 - -
Lele42g1129 644 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1129 Lele-ChrLele42 23705321 23707255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1129 12 644 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.182 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele42g1129 bHLH-MYC_N 4.1e-56 CL0161