Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1114 ATGATCCATTGGCTACTTGGTGGAATAGTTTCAAACATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAACGCCTGTTCGCAAAGTATGGGAGGATAGAACGTGTTGACATGAAATCGGGTTTTGCGTTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGTGCATTAGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTGGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCCAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATTAACTTTGACCCAATTCGCACTAGAGTTCGTGATATAGAAAGACACTTTGAACCATATGGGAAAGTTCATCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAATTTGAGACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACACATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGACGATGAGAGGGGTGACAGATATTATGACAGCCCCAGAAGAGGAGGAGGGGGTTATGGCAGATCACCCAGTCCAGTTGCTCGTAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCAGTGTACGATAGGTACAATGGACCAGCATATGACAGACGTAGGAGTCCTGATTATGGTAGGCCAAGGAGTCCTGAATATGGTAGATACCGCAGCCGCTCACCAATCCGAAGGTCCAGGACTTGA 771 0.4695 MIHWLLGGIVSNMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVHHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPEYGRYRSRSPIRRSRT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1114 256 Gene3D - 96 184 IPR012677 -
Lele42g1114 256 Gene3D - 10 95 IPR012677 -
Lele42g1114 256 SUPERFAMILY RNA-binding domain, RBD 14 177 IPR035979 GO:0003676
Lele42g1114 256 MobiDBLite consensus disorder prediction 223 248 - -
Lele42g1114 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Lele42g1114 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 72 IPR000504 GO:0003723
Lele42g1114 256 MobiDBLite consensus disorder prediction 178 256 - -
Lele42g1114 256 FunFam Serine/arginine-rich splicing factor RS31 97 185 - -
Lele42g1114 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 103 248 - -
Lele42g1114 256 FunFam Serine/arginine-rich splicing factor RS31 13 96 - -
Lele42g1114 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 174 IPR000504 GO:0003723
Lele42g1114 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 86 IPR000504 GO:0003723
Lele42g1114 256 SMART rrm1_1 104 170 IPR000504 GO:0003723
Lele42g1114 256 SMART rrm1_1 15 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1114 Lele-ChrLele42 23577174 23580114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1114 16 253 Eukaryotic Initiation Factors Gene Family AT4G34110 26.937 4.12e-10 57.8