Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1113 ATGCGGGAAAAAGAGAAGTCAAAGGCTCGTACCGTCGTACTTAAGGGACTTCTTTGTCTTTGCTTTGTTTCCAAGCTACAGACTTTGACGTCTTCTGCTTCTTCTAATGCCTACAACTCAACTTCTTTTCCATACGAGATGAAAACGTCAACAAAGGAAGATAAACCATTCCCTGCATGGTCATGGTCTGTTGAACAGTGCTTGAGAGAATACAGTGTTAAACTTGAAAAGGGTTTAAATACCTCGGAGGTTGAGAAGCGACGCGAGAGATATGGTTGGAACGAGTTAGCAAAAGAGAAAGGGAAGCCCTTATGGCAACTAGTATTAGAGCAATTTGATGACATGCTTGTGAAGATTCTTCTGGTTGCAGCTTTTATATCATTCATTCTGGCTTATTTACATGGAAGTGAATCAGGAGAGTCTGGGTTTGAAGCTTATGTGGAGCCACTTGTGATAATTTTTATTTTAGTACTTAATGCCATTGTTGGAGTTTGGCAAGAGAACAACGCTGAGAAGGCACTTGATGCTCTCAAAGAGTTGCAGTGTGAATCTGGAAAAGTGTTAAGAGATGGGCATTTTGTGCCTGATTTGCCTGCAAGAGAGCTTATTCCTGGTGACATTGTGGAATTGCATGTAGGAGATAAAGTTCCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCAACTTTGAGAGTTGAACAAAGCTCTTTAACTGGTGAAGCAATGCCTGTTTTGAAAGGCACAAATCCTATTTTCATGGATGATTGTGAATTGCAGGCCAAAGAAAATATGGTTTTTGCAGGCACCACTGTTGTCAATGGGAGCTGCGTCTGTATTGTCATTACCACCGGGATGAACACCGAAATCGGAAAGATACAGAAGCAAATTCATGATGCTTCTTTGGAGGATAGTGACACTCCATTAAAGAAGAAGCTGGATGAGTTTGGTGGGCAGCTTACCACTGCAATTGGGCTGGTTTGCCTTGTTGTGTGGGTTATAAACTACAAAAACTTCCTTTCTTGGGAGCTTGTGGATGGATGGCCTTCAAACATCAAGTTTTCTTTTGAGAAGTGCACTTATTATTTTAAAATTGCTGTTGCCTTGGCTGTAGCTGCAATCCCTGAAGGCCTTCCCACTGTAATCACAACTTGTTTGGCCCTTGGTACGAGGAAAATGGCGCAAAAGAATGCGATTGTAAGAAAGCTTCCGAGTGTAGAAACTCTCGGATGCACTACTGTTATTTGTTCAGATAAAACTGGTACTTTGACAACAAATCAGATGTCCGTGACAGAGTTCTTTACTTTGGGAGGAAAAACCACTGCTTCTCGAGTCATCCATGTTGAAGGCTCAACTTATGATCCTAGAGATGGACGAATCGTGGATTGGACTTGCTATAACATGGATGCCAACTTGCAGGCCATGGCAGAAATCTGTGCCATTTGTAATGATGCTGGGATTCATTTTGATGGTCGCCTTTTCTGGGCTACAGGTTTGCCAACTGAAGCCGCTCTCAAGGTTTTGGTAGAAAAGATGGGAGTTCCAGATAACAAGGCAAGGAACAGAATTCGGGATACAGAAGTTGCTGCAGGCAACTTGATTGATAGCAACACTGTTAAGTTAGGAAGTTGTGAGTGGTGGACAAGAAGATCCAAAAGAGTTGCCACATTGGAGTTTGATCGAATTAGGAAGTCAATGAGTGTTATTGTTCGTGAACCAATTGGGCGAAATCGTCTTTTGGTTAAAGGAGCTGTTGAGAGTCTACTTGAACGTAGTTCACATGTGCAACTAGCTGATGGATCCCTGGTTCCAATTGATGAGCAATGTAGGGAACTACTGTTTTCAAGACTCTTGGAGATGAGTTCAAAAGGATTGCGGTGCTTGGGTTTTGCATATAAGGATGACTTGGGTGAATTTTCGGACTATTATGCTGAAAATCATCCTGCTCACAAGAAATTGCTTGATCCTACTTGCTACTCATCCATTGAAAGTGATATAGTATTTGTTGGTGTTATTGGTCTAAGAGATCCTCCCCGTGAGGAAGTTCATAGGGCGATCGAGGATTGCAAGGAAGCTGGTATTAGAGTTATGGTGATAACTGGAGATAACAAGTCCACGGCGGAAGCTATTTGTCGGGAAATTAATCTGTTCTCTAGAGATGAGGATCTTACAGAGAGAAGTCTGACAGGCAAGGAGTTCATGTCTCTTTCTCATTCAGAACAAGTTAAAATGTTGTCAAGACCTGGAAGCAAGGTATTCTCTCGAGCCGAGCCTAGACACAAGCAAGAGATTGTGAGGTTACTGAAGGATATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCTCCTGCTCTTAAACTTGCTGACATAGGCATTGCCATGGGCATAACAGGAACTGAGGTTGCAAAAGAAGCTTCAGACATGGTGCTTGCAGATGACAACTTTAGTACCATTGTTTCAGCTGTTTCTGAGGGTCGCTCTATTTACAATAACATGAAAGCCTTTATTAGATACATGATATCATCCAATGTTGGAGAAGTGATATCTATATTCTTGACTGCTGCCCTGGGGATCCCAGAATGTATGATTCCTGTGCAACTTCTGTGGGTGAATTTGGTTACTGACGGTCCTCCTGCAACAGCTCTGGGTTTTAACCCAGCTGATGTTGATATCATGCGGAAGCCACCTCGTAAAGCTGATGAACCTCTCATCAGTTCATGGGTTCTTTTCCGTTATCTGGTAATTGGTTCCTATGTAGGGATTGCAACGGTGGGAATGTTTGTCTTGTGGTATACGCAAGCATCTTTTCTCGGCATCGATCTGGCTAGTGATGGGCATACAGTCGTAGAATTTTCTCAGCTTCGCAACTGGGGGGAGTGTCGTTCATGGTCAAATTTTTCTGCTTCTCCATTTACAGTAAGTGGGGGTCGCCTGATCACATTCTCAAATCCATGTGATTACTTTTCAGTTGGAAAAGTGAAGGCCATGACTCTCTCTCTCTCAGTTTTGGTGGCAATTGAGATGTTTAACTCTTTCAATGCTTTATCTGAAGAAAACAGCTTGTATGAAATGCCCCCATGGAGGAACCCTTGGCTTTTGGTAGCCACAACAGTATCACTAGGACTCCATTGCCTTATCCTCTATGTTCCATTTCTTGCAGAAGTTTTTGGTGTCGTTCCACTAAGTCTCAAAGAATGGTTTTTGGTGATCCTAGTTTCTTTACCTGTAATTTTTGTTGATGAGGTTCTGAAATTAGTGGCAAGGAGGAGTAGGAGAGTGAGAAAGGAGAAAACAGCATGA 3306 0.4256 MREKEKSKARTVVLKGLLCLCFVSKLQTLTSSASSNAYNSTSFPYEMKTSTKEDKPFPAWSWSVEQCLREYSVKLEKGLNTSEVEKRRERYGWNELAKEKGKPLWQLVLEQFDDMLVKILLVAAFISFILAYLHGSESGESGFEAYVEPLVIIFILVLNAIVGVWQENNAEKALDALKELQCESGKVLRDGHFVPDLPARELIPGDIVELHVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPIFMDDCELQAKENMVFAGTTVVNGSCVCIVITTGMNTEIGKIQKQIHDASLEDSDTPLKKKLDEFGGQLTTAIGLVCLVVWVINYKNFLSWELVDGWPSNIKFSFEKCTYYFKIAVALAVAAIPEGLPTVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTASRVIHVEGSTYDPRDGRIVDWTCYNMDANLQAMAEICAICNDAGIHFDGRLFWATGLPTEAALKVLVEKMGVPDNKARNRIRDTEVAAGNLIDSNTVKLGSCEWWTRRSKRVATLEFDRIRKSMSVIVREPIGRNRLLVKGAVESLLERSSHVQLADGSLVPIDEQCRELLFSRLLEMSSKGLRCLGFAYKDDLGEFSDYYAENHPAHKKLLDPTCYSSIESDIVFVGVIGLRDPPREEVHRAIEDCKEAGIRVMVITGDNKSTAEAICREINLFSRDEDLTERSLTGKEFMSLSHSEQVKMLSRPGSKVFSRAEPRHKQEIVRLLKDMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVSEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMRKPPRKADEPLISSWVLFRYLVIGSYVGIATVGMFVLWYTQASFLGIDLASDGHTVVEFSQLRNWGECRSWSNFSASPFTVSGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSFNALSEENSLYEMPPWRNPWLLVATTVSLGLHCLILYVPFLAEVFGVVPLSLKEWFLVILVSLPVIFVDEVLKLVARRSRRVRKEKTA 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1113 1101 Pfam haloacid dehalogenase-like hydrolase 412 791 - -
Lele42g1113 1101 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 353 440 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g1113 1101 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 750 861 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g1113 1101 SUPERFAMILY Calcium ATPase, transduction domain A 187 295 IPR008250 -
Lele42g1113 1101 Gene3D - 425 676 IPR023299 GO:0000166
Lele42g1113 1101 FunFam Calcium-transporting P-type ATPase, putative 671 822 - -
Lele42g1113 1101 SFLD Haloacid Dehalogenase 396 829 - -
Lele42g1113 1101 SUPERFAMILY HAD-like 413 881 IPR036412 -
Lele42g1113 1101 SUPERFAMILY Calcium ATPase, transmembrane domain M 58 1092 IPR023298 -
Lele42g1113 1101 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 425 676 - -
Lele42g1113 1101 FunFam Calcium-transporting ATPase, putative 263 411 - -
Lele42g1113 1101 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 422 673 IPR023299 GO:0000166
Lele42g1113 1101 SMART Cation_ATPase_N_a_2 58 132 IPR004014 -
Lele42g1113 1101 FunFam Calcium-transporting ATPase, putative 162 297 - -
Lele42g1113 1101 Pfam Cation transporting ATPase, C-terminus 862 1088 IPR006068 -
Lele42g1113 1101 PRINTS P-type cation-transporting ATPase superfamily signature 415 429 - -
Lele42g1113 1101 PRINTS P-type cation-transporting ATPase superfamily signature 691 701 - -
Lele42g1113 1101 PRINTS P-type cation-transporting ATPase superfamily signature 233 247 - -
Lele42g1113 1101 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Lele42g1113 1101 PRINTS P-type cation-transporting ATPase superfamily signature 669 680 - -
Lele42g1113 1101 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Lele42g1113 1101 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 841 1095 - -
Lele42g1113 1101 Gene3D - 412 822 IPR023214 -
Lele42g1113 1101 PANTHER CALCIUM-TRANSPORTING ATPASE 66 1094 - -
Lele42g1113 1101 PRINTS Sodium/potassium-transporting ATPase signature 408 429 - -
Lele42g1113 1101 PRINTS Sodium/potassium-transporting ATPase signature 1030 1054 - -
Lele42g1113 1101 Pfam E1-E2 ATPase 181 395 - -
Lele42g1113 1101 Pfam Cation transporter/ATPase, N-terminus 60 127 IPR004014 -
Lele42g1113 1101 Gene3D - 110 1090 - -
Lele42g1113 1101 Gene3D - 77 299 - -
Lele42g1113 1101 ProSitePatterns E1-E2 ATPases phosphorylation site. 417 423 IPR018303 -
Lele42g1113 1101 SFLD p-type atpase 396 829 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1113 Lele-ChrLele42 23566542 23571716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1113 52 1098 Primary Pumps ATPases(2) AT4G00900 77.471 0.0 1685