Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1111 ATGGTAGTAGATGCATTGTCTTCTGCCACTTCTGGTCCTGCTTCAGAAGTTATTTCTCAGCTTATAGATTGTATTTTTGAGCTTGTACTATGTGCTAATGATGTCCTTGTGAACAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGGAAAGAATTGTACCCATCCTAAAAGAATTGAGGACGAAAAAAGTCAGTGATATTGAGACATTTAACCGCACCATTGACATTTTGAATCGTGAAATTAGAGAGGCAAATAATCTGATTCAAGAATGCAGCAAGAGGAACAAGGTCTATCTCTTATTGAACTGCAGGTCTATTACAAAGCATTTAAAGAATAGTACAAGCGAGATCAACCGTGCTCTTGGATTTATTCCTCTTGCTATCCAAGATCTTTCTTCTGGAATAATTGAAGAAATTGAAAATCTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCAGAAGAGCAGATTTTGGAGAAAATCGAGACAGGGATACATGAAAAGAATATTGACCGCTCTTATGCCAATAATTTGTTGATTCTTATTGCACAAGCTGTTGGCATAACAAATGAGAAGTCAACAATGAAGAAGGAACTGGAAGAATTCAAGAGTGAAGTTGAAAAAACCCGTCTAAGGAAGGACTTGGCCGAAGCTATACAAATGGATCAGATCATTGCTTTGCTTGAAAGGGCTGATGCAGTCTCATCACCAAGGGAAAAAGAACTGAAATACTTTGCAAAACGAAAATCTCTTGGAAGTCAACCCTTAGATCCTCTTCGATCATTTTATTGCCCCATAACTCGGGATGTTATGGTAGACCCTGTTGAAACTTCTTCAGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAAATGTGTCCTCTTACGATGACTCCTTTAGATACATCAGTTTTGCGACCTAATAAAACCTTGAAACAATCAATAGAAGAATGGAAGGATCGAAATACTATGATTAGTATTGCTTCAATGAAAGAAAAAATCCAGTCAGGAGAGGATGAAGAAATACTGTGTTGTCTGAAAACTCTGAAGGAATTGTGTGAAGAAAAAGATCAGCACATAGAATGGATGGTAATGGAGAATTACATGACTGTTCTTATCCAGGTTCTTGGCTCCAGAAACCGTGATGTAAGGAATGAAGCTCTTGTCATCCTTTTCATGTTGGCTAAGGATAGCGATGATGCCAAGGAAAGACTTGCAAATGTTGATAATGCAGTTGAATCAATTGTCCGTACTCTTGGACGTCGTGTGACGGAAAGGAAATTGGCAGCAGCATTACTGTTGGAGTTATCCAAGTATGATAGGTTACGAGAATACATTGGAAAGGTTCAAGGTTGCATACTACTATTAGTGACTATATCTAGCAGTGATGACAACCAAGCTGCCAGGGATGCTACAGAACTACTGGAGAATCTTTCATACTCTGATCGGAATGTTTTGCAGATGGCAAAGGCAAATTATTTCAAGCATCTATTGCAGCGCCTTTCCTCAGGACCAGATGATGTAAAATTGCTTATGGCCACAACTCTAGCAGAAATGGAGTTAACCGACCACAATAAGGAGTCTTTATTTGCAGGTGGCGTTCTGGATCCTCTTCTTCACCTGGTCTCACATGGTGATCCTCAGGTGAGGACCATGGCCATCAGAGCTCTTCGGAACCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGAGCAGTTCGCCCATTATTTAGGCTTCTTTTCCAACGTAGCTTACCACCCTCAAGTTTATGGGAACATGTAGCTGCCATAGTCATGCAACTTGCTGAATCAACCATTGCTCAAGATACCCAGACACCAGTTTTATTATTTGAATCTGATGATGATGTTTTTAACCTCTTCGCCTTAATTAGATTCTCAGGGCCTGAGGTGAAGCGAAACATTATCCAGACCTTTTATGCCTTGTGTCAATCCACATCAGCTTCATACATCAAGACCAAGCTAATAGAGTGCTCTGCTGTTCAAGAACTGGTTCGGTTTTGTGAGAATGAAAACCTTGATCTACGAGCAAGTGCTGTAAAACTGTTGTCATGCTTGGTTGCAAGTTGCGATGAGTCAAGCATTCTGGAGAATGTAAACCAGAAGACTTGTGAGAATTTAGTATGGATCCTTAGATCTTCTTCGGGTGAAGAAGAACTTGCTTCTGCTATGGGCATAATATGCCAACTTCCAGAAATTCCCCAGATCTCTCAATGGCTTCTAGATGATGGTATACTGCCCATCATTTATAGGTATATCCAAGAAGGGAAAGACAAAGATCTCCAAAATAACAACTTAGTAGAGAATTCTGTGGGTGCCCTAAGTCGTTTCACAGTCCCAGCAAACTTGGAGTGGCAAAGAAGTGCAGCAGAAACCGGTATTATAACCGTTTTAGTACAGCTGCTTGAATGTGGAACCACATTGGCAAAACAACGGTCAGCATTGTGTCTTAGTCAATTCTCAAAGAGTTCAGTTAAGCTGAGCAAGCCAATTTCCAAGCACAAGGGATTCTGGTGCTTCTCAGCTTCTGCAGGAACCAGCTGCTTGGTTCATGGAGGAATCTGTTCTGTCAAGTCAACATTTTGCCTTGTAGAGGCCGATGCAGTGGGGCCTCTAACAAGGACTCTGTGGGATTCAGATCCTGGAGCTTGCGAGGCTTCTTTGGATGCACTCCTGACTTTGATTGAAGGTGAGAGACTGCAGAGTGGTAGTAAAGTGCTTGACACAGGAAATGCCATACCAGCAATGATAAGATTTCTCAGTTCCTCATCCCCTGGATTGCAGGAAAAATCTCTAAATGCTTTGGAGAGGATTTTTCGGTTAATTGAGTATAAACAAAAGTATGGAGCCTCAGCTCAAATGCCCCTAGTTGACTTAACCCAGCGCGGTAATAGTATCATGAGATCGGTGGCAGCTAGAATATTGGCACATCTAAATGTGCTTCATGATCAGTCTTCTTATTTCTGA 3021 0.4101 MVVDALSSATSGPASEVISQLIDCIFELVLCANDVLVNKDSFKELAAYLERIVPILKELRTKKVSDIETFNRTIDILNREIREANNLIQECSKRNKVYLLLNCRSITKHLKNSTSEINRALGFIPLAIQDLSSGIIEEIENLCDNMQKAEFKAAIAEEQILEKIETGIHEKNIDRSYANNLLILIAQAVGITNEKSTMKKELEEFKSEVEKTRLRKDLAEAIQMDQIIALLERADAVSSPREKELKYFAKRKSLGSQPLDPLRSFYCPITRDVMVDPVETSSGQTFERSAIEKWFAEGNKMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMISIASMKEKIQSGEDEEILCCLKTLKELCEEKDQHIEWMVMENYMTVLIQVLGSRNRDVRNEALVILFMLAKDSDDAKERLANVDNAVESIVRTLGRRVTERKLAAALLLELSKYDRLREYIGKVQGCILLLVTISSSDDNQAARDATELLENLSYSDRNVLQMAKANYFKHLLQRLSSGPDDVKLLMATTLAEMELTDHNKESLFAGGVLDPLLHLVSHGDPQVRTMAIRALRNLSSLKKNGLEMIRQGAVRPLFRLLFQRSLPPSSLWEHVAAIVMQLAESTIAQDTQTPVLLFESDDDVFNLFALIRFSGPEVKRNIIQTFYALCQSTSASYIKTKLIECSAVQELVRFCENENLDLRASAVKLLSCLVASCDESSILENVNQKTCENLVWILRSSSGEEELASAMGIICQLPEIPQISQWLLDDGILPIIYRYIQEGKDKDLQNNNLVENSVGALSRFTVPANLEWQRSAAETGIITVLVQLLECGTTLAKQRSALCLSQFSKSSVKLSKPISKHKGFWCFSASAGTSCLVHGGICSVKSTFCLVEADAVGPLTRTLWDSDPGACEASLDALLTLIEGERLQSGSKVLDTGNAIPAMIRFLSSSSPGLQEKSLNALERIFRLIEYKQKYGASAQMPLVDLTQRGNSIMRSVAARILAHLNVLHDQSSYF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1111 1006 Coils Coil 139 159 - -
Lele42g1111 1006 Pfam Armadillo/beta-catenin-like repeat 533 571 IPR000225 GO:0005515
Lele42g1111 1006 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lele42g1111 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 331 IPR013083 -
Lele42g1111 1006 SMART arm_5 531 571 IPR000225 GO:0005515
Lele42g1111 1006 SMART arm_5 365 405 IPR000225 GO:0005515
Lele42g1111 1006 SMART arm_5 874 914 IPR000225 GO:0005515
Lele42g1111 1006 SMART arm_5 917 958 IPR000225 GO:0005515
Lele42g1111 1006 SMART arm_5 448 489 IPR000225 GO:0005515
Lele42g1111 1006 SMART arm_5 666 706 IPR000225 GO:0005515
Lele42g1111 1006 SMART arm_5 407 447 IPR000225 GO:0005515
Lele42g1111 1006 CDD RING-Ubox_PUB 265 306 IPR045210 -
Lele42g1111 1006 Gene3D - 432 627 IPR011989 -
Lele42g1111 1006 Gene3D - 865 1004 IPR011989 -
Lele42g1111 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Lele42g1111 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1006 - -
Lele42g1111 1006 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lele42g1111 1006 SUPERFAMILY ARM repeat 338 996 IPR016024 -
Lele42g1111 1006 Coils Coil 67 94 - -
Lele42g1111 1006 Coils Coil 188 222 - -
Lele42g1111 1006 SUPERFAMILY RING/U-box 252 332 - -
Lele42g1111 1006 Gene3D - 633 855 IPR011989 -
Lele42g1111 1006 Gene3D - 332 431 IPR011989 -
Lele42g1111 1006 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Lele42g1111 1006 Gene3D - 14 129 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1111 Lele-ChrLele42 23556761 23561734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1111 264 1006 U-box Gene Family AT1G76390 28.464 3.60e-64 231