Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1101 ATGTCAGCTCATTGTGAATTCTCTCATTCTGCCGCAGCAGAAACATACAACACCATCACACCAACTTCTTCTTCTTCCTCATCATTAACAAGAACATCGAGCTTCAGGAACAAGAAGAACAGCAGTAGCAAGATAAGGTTCAGTGAGGAGCAAATCAAGTTATTGGAATCCATTTTCGAGACAGAATCCAAGCTCGACCATTCAAAAAAGTTGCAGCTTGCTTCAGAACTTGGCTTGCAGCCACGCCAGGTGGCCATATGGTTCCAGAACAGACGAGCTCGATCCAAATCCAAGCATCTCCAACGTTCCTACTCTTTACTTCAAGCCAATTACGATGCTCTGGCTTCCAAATTCGAGGCCCTCAAGAAGGAGAATCAAGCATTACTGCTAGAGTTGCATAAGCTGAAAGATTTGGAAGATGAAACCTTTTGTTGTAACAAAGTGAGAGATGAAAATATGAAGCCAAGTCCAATAATGGGAAGATCAGGACAGATACTTGGGGTTGTTTCAGATGATGATTTTGGGCTTGAAGATGAAGAACCTATGATTCTGAACTTGGCTGATAAGAACACAGATGGTCACTTGACATCATCACAAGAAATTTGGAGAAATCTTGAATCTACTGATGACCTCTTTGCCCAATCTGACTGTGGTAATGACCAAAAAAGCCTTCTTCGTCTCCTTCGTCTTGCTCTTTGCTCTCGTGTTCCCACAACTGGAGGAAAAAAGCTTGCAACTTGTGGCGGTGTCTCACTGGAATCTTCATATGAAAAGGCAACCGGATGCGTCTATGCATCCACCCTTTTGTATCAATGCAGAGGATTTGGCATGAGACCAAGATTCTCCACAAACTTTTACATAACGGACCAGAAGTCTGGGACACAAGTGGTGGTGAAAGCTGGTTCCAGCAGCAAGGACCGAAACCTCTCAGCTGAAGCTCGCATTCTTCGTCTAGAAGAAGGGTATGTACAGGAAGGTAGCTCTGTGACGGTAATTGGAATGTTGCATAGAAACGATGATATTGTCATGATCATTGAGCCGATCGGGGTAATTTCGACTGGATGTATGTGGCAAAAGCTTCTTCTCCCTGTTGACATTGATGGACTCATAATTGGGATCTCTCAGATGGCCGTCCCTGTGACCACCCAAGAGTCAAGCCAATCCATAGAACAAATTATACTTGACGCATCAGAATTGGATGTGCTATTCTTTGAAGGGAATGCTATCTGCTATTCTTTGAAGGGAATGCTATCTGCTATTCCCTTTTCTGTCAAGGAGATTGATATGCTAGCTATTCCATTTGACTGA 1308 0.4343 MSAHCEFSHSAAAETYNTITPTSSSSSSLTRTSSFRNKKNSSSKIRFSEEQIKLLESIFETESKLDHSKKLQLASELGLQPRQVAIWFQNRRARSKSKHLQRSYSLLQANYDALASKFEALKKENQALLLELHKLKDLEDETFCCNKVRDENMKPSPIMGRSGQILGVVSDDDFGLEDEEPMILNLADKNTDGHLTSSQEIWRNLESTDDLFAQSDCGNDQKSLLRLLRLALCSRVPTTGGKKLATCGGVSLESSYEKATGCVYASTLLYQCRGFGMRPRFSTNFYITDQKSGTQVVVKAGSSSKDRNLSAEARILRLEEGYVQEGSSVTVIGMLHRNDDIVMIIEPIGVISTGCMWQKLLLPVDIDGLIIGISQMAVPVTTQESSQSIEQIILDASELDVLFFEGNAICYSLKGMLSAIPFSVKEIDMLAIPFD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1101 435 Pfam Homeobox associated leucine zipper 98 138 IPR003106 GO:0006355|GO:0043565
Lele42g1101 435 Gene3D - 33 105 - -
Lele42g1101 435 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 171 IPR045224 GO:0003700
Lele42g1101 435 Coils Coil 104 141 - -
Lele42g1101 435 CDD homeodomain 46 99 IPR001356 GO:0003677
Lele42g1101 435 PRINTS Lambda-repressor HTH signature 78 94 IPR000047 GO:0003677
Lele42g1101 435 PRINTS Lambda-repressor HTH signature 69 78 IPR000047 GO:0003677
Lele42g1101 435 ProSitePatterns 'Homeobox' domain signature. 73 96 IPR017970 GO:0000981|GO:0006355
Lele42g1101 435 SUPERFAMILY Homeodomain-like 21 98 IPR009057 -
Lele42g1101 435 SMART HOX_1 40 102 IPR001356 GO:0003677
Lele42g1101 435 Pfam Homeodomain 43 96 IPR001356 GO:0003677
Lele42g1101 435 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1101 Lele-ChrLele42 23474018 23481191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1101 46 199 Homeobox Transcription Factor Family AT3G61890 42.938 2.91e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele42g1101 Homeodomain 4.3e-17 CL0123