Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1096 ATGGATGATTTGATCATCGCTCCTTCTTCCTCTTCCTCTCTTCTCTGCCTCCCCCGAGATACTCAACCCTCCCTTCAGCAGAAGCTCCAATTCCTTCTTAACAGTCAGCCCGATTGGTGGGTCTACGCCATTTTCTGGCAGATTTCCAACGACGACGTTCATGGCAATCTCCTCCTCTCCTGGGCTGAAGGCCATTTCAATGGCACCAAGGATACCTCCCCTCGTCTCTCCAGTTCCACCTCCAACATCACCTCCGCCACTTCTTCTGCCGCCCCACATTACACGGACCTCCATTCTGACAGATCAAGGCTCATGAACAATATTCACTCTCTCATCAACGATAATTCCCACAATAGCGCCAACATTTGCAGTGATCTCCACGATACCGAGTGGTTCTATGTCATGTCCTTGACTCGCAACTTCACTGTCGCTTCCTCTGCTTCTCTCCCCAGTAAAGCCTTCACTTCTGGTTCTCTGATCTGGCTCAACGGTGACCACGACCTTCAATTTTGCAACTGTGAGAGAGCCAAGGAGGCTTACTTACACGGGATTGAGACTCTGATCTGCATACCCACCAGTCATGGGGTCATCGAAATGGGCTCCTCCGATCTCATCCCGGAAAACTGGGCTCTCGCACAGCAGGCCAAGGCTCTGTTTGGGTCTGATCTTATCGCCAAGCAACCCAACAACAACCTGATTCAGTTCTTCGACGATCAGAACATTTCCTTCGCTGATATCGGCATTATCGCCGGCGTGCAAGAAGAAGACGACAATTCCCATGAGCCCGACGGCGATAACAGCGCAAGGAGTAATAACGGCAAGAGGAAGGCGGAACAGAGGAATAAGGCGAATTCGGGATTCAAGTTCGGGTATGCGGATTCAGAGCATTCCGATTCGGATTGTAATCCTTCGATAGAGAAAAGAACCCCAAAGAAGAGAGGGAGAAAACCCGGTATGGGCCGCGAAACGCCGCTGAACCACGTGGAGGCAGAGCGGCAGCGACGGGAGAAGCTGAACCACCGGTTCTACGCGCTACGCGCGGTGGTTCCGAACGTATCGAGAATGGACAAGGCATCTCTGTTATCGGACGCCGTGGACTACATCAACGAGCTGAAATCGAAGATCGAGGACCTGGAGTCGAAGAGTCAGAAAGATACGACCAACAATAACAACAGCAAAAGGGTGAAAATGGAAATGGCGGACACTAGCACCGCGGACAACCAGAGCGCGACGACTTCAACAGTGGAGCAAACGACAACGACGACGTCATCGGGAGGGGCAAGCGCGACGGGGATGGAGGTGGAGGTGAGGATGATGGGACCGGAGGCAATGGTGAGGGTCCAATCGGAGAAGACGAACCACCCAGGGGCGAGGCTAATGGTGGCGTTGAGAGACTTGAAACTAGGGGTTCACCATGCGAGCATGTCGTGCGTGAATGAGCTCATGCTGCAAGACGTGCTGGTGAAGATTCCTGAAGATTTGAGAAACGAAGACACCCTCAAATCTGCCATTCTGGGGCGTTTGGCTCCCTAG 1533 0.5277 MDDLIIAPSSSSSLLCLPRDTQPSLQQKLQFLLNSQPDWWVYAIFWQISNDDVHGNLLLSWAEGHFNGTKDTSPRLSSSTSNITSATSSAAPHYTDLHSDRSRLMNNIHSLINDNSHNSANICSDLHDTEWFYVMSLTRNFTVASSASLPSKAFTSGSLIWLNGDHDLQFCNCERAKEAYLHGIETLICIPTSHGVIEMGSSDLIPENWALAQQAKALFGSDLIAKQPNNNLIQFFDDQNISFADIGIIAGVQEEDDNSHEPDGDNSARSNNGKRKAEQRNKANSGFKFGYADSEHSDSDCNPSIEKRTPKKRGRKPGMGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIEDLESKSQKDTTNNNNSKRVKMEMADTSTADNQSATTSTVEQTTTTTSSGGASATGMEVEVRMMGPEAMVRVQSEKTNHPGARLMVALRDLKLGVHHASMSCVNELMLQDVLVKIPEDLRNEDTLKSAILGRLAP 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1096 510 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 219 IPR025610 -
Lele42g1096 510 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Lele42g1096 510 MobiDBLite consensus disorder prediction 379 428 - -
Lele42g1096 510 MobiDBLite consensus disorder prediction 255 332 - -
Lele42g1096 510 MobiDBLite consensus disorder prediction 384 428 - -
Lele42g1096 510 MobiDBLite consensus disorder prediction 293 308 - -
Lele42g1096 510 Coils Coil 361 388 - -
Lele42g1096 510 CDD bHLH_AtAIB_like 319 384 - -
Lele42g1096 510 Gene3D - 320 389 IPR036638 GO:0046983
Lele42g1096 510 PANTHER MYC 19 507 IPR045084 GO:0003700|GO:0006355
Lele42g1096 510 SMART finulus 328 377 IPR011598 GO:0046983
Lele42g1096 510 MobiDBLite consensus disorder prediction 316 332 - -
Lele42g1096 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
Lele42g1096 510 MobiDBLite consensus disorder prediction 70 93 - -
Lele42g1096 510 MobiDBLite consensus disorder prediction 255 282 - -
Lele42g1096 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 380 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1096 Lele-ChrLele42 23403249 23404781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1096 25 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.433 1.31e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele42g1096 bHLH-MYC_N 9.9e-48 CL0161