Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1084 ATGCAGGAGAACATGAGCATCTCCGTCAATGGACAATCCCAGGTGCCTCCTGGTTTTCGCTTCCATCCAACCGAAGAGGAGCTTTTGCAGTATTACCTCAGGAAGAAGGTCTGCTACGAGAAGATCGACCTCGACGTTATTCGCGATGTCGATCTCAACAAGCTCGAGCCTTGGGATATACAAGAGAAGTGCAAAATTGGAACCACCCCACAGAACGATTGGCTTGAAGATAACAACACCAACACCGAGACCAGCATTGTTACGAATGTAATAGGAGATGGAGCACAGGAAGAAGGGTGGGTGGTTTGCAGGATTTTCAAGAAGAAGAACCATCTCAAAACCCTAGAGAGTCCCTTGGCTTTGTCCATTACAGAGGAAACAATCAGAAGCCACGACCACGACTCCATGTTCGATCCTTGTGACGACGACGAGGGAGCTCTGGAGCAAATTCTCGAGCAAATGGGAAGAAGCTGTTGCAAAGAAGAAGAAGAACAAAACGGCCCCACCAACACCACCAACAACAACAACCAAAGAATCACCAGACCGTTTGAAGACACTTTCATGGACAACAGCAGCAGCAGCAGCAACCTTAACAATGGCTACTTCCACCATGACAGGTTCTCGAAGCTTCCTCGCTTAGAAAGCCCAAAATCTAATAATTACGCGTACCGCCCTATCATTGAAGGAGCATATGGCGACGGCGGCGGTGGCGAGCACAGCTTTGTTCATCATCAGACGGAATCGGCAACTTCATCTGTTAATGGAGGTCTTATCACCAACTGGGCAGCACTGGATCGGCTGGTAGCTTCGCAGCTGAATGGCCAAACAGAGACTTGTCGGAGCCTACCTTTCTTCAATAATAATACCACCGGAGAGCCCACCACCACCATGGGCTATGGCTTGAGCGAGCATGGTCTGCAACTTCTTCCGACCCTACGATCTTCGTCACTTTCATCAATAACATCATCATCAGCAGCCCACAACAGTGGAGCTAATTACGATTACACCAACGAGATTGACCTCTGGGACTTTGCCCGATCCGCATCATCGTTAGTATCAGGCTCCGAACCACTATGCCACGTGTTCAACACATCATCAGTGTAG 1104 0.49 MQENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVCYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWLEDNNTNTETSIVTNVIGDGAQEEGWVVCRIFKKKNHLKTLESPLALSITEETIRSHDHDSMFDPCDDDEGALEQILEQMGRSCCKEEEEQNGPTNTTNNNNQRITRPFEDTFMDNSSSSSNLNNGYFHHDRFSKLPRLESPKSNNYAYRPIIEGAYGDGGGGEHSFVHHQTESATSSVNGGLITNWAALDRLVASQLNGQTETCRSLPFFNNNTTGEPTTTMGYGLSEHGLQLLPTLRSSSLSSITSSSAAHNSGANYDYTNEIDLWDFARSASSLVSGSEPLCHVFNTSSV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1084 367 MobiDBLite consensus disorder prediction 159 178 - -
Lele42g1084 367 Pfam No apical meristem (NAM) protein 16 67 IPR003441 GO:0003677|GO:0006355
Lele42g1084 367 Gene3D NAC domain 24 83 IPR036093 GO:0003677|GO:0006355
Lele42g1084 367 ProSiteProfiles NAC domain profile. 15 185 IPR003441 GO:0003677|GO:0006355
Lele42g1084 367 MobiDBLite consensus disorder prediction 164 178 - -
Lele42g1084 367 SUPERFAMILY NAC domain 9 108 IPR036093 GO:0003677|GO:0006355
Lele42g1084 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1084 Lele-ChrLele42 23310464 23312025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1084 1 365 NAC Transcription Factor Family AT2G46770 36.935 2.31e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele42g1084 NAM 9.6e-13 No_clan