Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1081 ATGTCTCATCCAAGGCAATTCCAGATGGTGGGTGGTTCTAACAATCCTCCTGGGCATTACAATGACACAACTTTTACTAAAATCTTTGTTGGTGGATTGGCTTGGGAGACTCAAAGGGACACGATGAGGAGATACTTTGAGCAGTTCGGTGAGATCCTTGAAGCTGTTGTTATTACAGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACACCTCAACATGGAACAGGAAGGTTCAGACAAGGACCTGGAGGACTGGTGGCTACTACACCTGCATACCATGGCTCTTCTTCTTCTACATTTTTCCATCAGCCCTCTGGCCAATATACTTTTCCTTATTCAACTTATGGGTATTCTGGATATTCACAAGACACCATGTATCCAATGAACTATTATAATGTATATGGAGGTCAACTGTTTTCACCATATTACCCTTCAAGTGGGGCATCTGGGCCACCGGGACTGGTCCATAATATTTACCCTTTCTATGCTCAATATGCTCACACTAGTAGCCAGGCTCAAGGCTTTGGACTTCAATATCCTCATCAAATGCTACAATTCCCATTTCTCTCTCATCAACACTATGCTGGCTCCACTGGGATCCTCTCTTTTCCTTCTTCTTCAATGCCATTGTCAACTACTACAACTAGTGCAGATGAGATGTATATAAGAGTTCCTTTTAAAGCTATTTTTGAGATAAAGGGTACTGAGGGAATGAAATTAACAGTTGTAACAACGACGACCAACACAGGGACGACAACAACAACATCAACAACAGTAGCAGCAGCAGCAACTGGGGCAGGTGATTCTTCACAAGCTTCTGGAACAGCTTCTGAACAAAAATCTTCAACTTAG 978 0.4305 MSHPRQFQMVGGSNNPPGHYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGTGRFRQGPGGLVATTPAYHGSSSSTFFHQPSGQYTFPYSTYGYSGYSQDTMYPMNYYNVYGGQLFSPYYPSSGASGPPGLVHNIYPFYAQYAHTSSQAQGFGLQYPHQMLQFPFLSHQHYAGSTGILSFPSSSMPLSTTTTSADEMYIRVPFKAIFEIKGTEGMKLTVVTTTTNTGTTTTTSTTVAAAATGAGDSSQASGTASEQKSST 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1081 325 MobiDBLite consensus disorder prediction 103 123 - -
Lele42g1081 325 CDD RRM_RBM24_RBM38_like 26 101 - -
Lele42g1081 325 FunFam RNA-binding protein 24-B isoform X1 13 119 - -
Lele42g1081 325 MobiDBLite consensus disorder prediction 304 325 - -
Lele42g1081 325 SMART rrm1_1 27 99 IPR000504 GO:0003723
Lele42g1081 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Lele42g1081 325 SUPERFAMILY RNA-binding domain, RBD 18 126 IPR035979 GO:0003676
Lele42g1081 325 PANTHER BOULE-RELATED 15 258 IPR037366 -
Lele42g1081 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lele42g1081 325 Gene3D - 3 121 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1081 Lele-ChrLele42 23272780 23274678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1081 22 102 C2H2 Transcription Factor Family AT2G19380 44.444 6.88e-16 76.6