Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1077 ATGAGTATGCTCTTGGAGAATATGGGTGAAGCGGTTCTTGCTAGCGGTAAAAAGGGGATGGAGGTGAGGTTGGAGGTAGAAGAAGACATGAACATGATGAACCACCTGAAGGATGAGAGCTCCACAAAAATGGATAAGTGGGACAAGCTTCTTCCTCAGATGGCGCTCAGAGTTCTGCTGGTGGAAGCTGATGATTCTACTCGCCAGATTATCGCAGCCCTTCTACGCAAATGCAGTTACAGAGTTGCTGCGGTTTCTGATGGATTAAAGGCGTGGGAGACATTGAAGAAGAAAGCTCCTGATATTGATCTCATATTAACTGAAGTGGAGCTGCCGTCAATATCTGGATTTGCACTTCTTACTTTAATCAAGGAGCATGAAATTTGTAGAAACATTCCCGTCATAATGATGTCTTCTCATGATTCTATCAGCATGGCAATGAAATGCATATTAAAAGGCACAGCCGACTTTCTTATAAAACCTGTTCGGAGGAATGTACTATCAACCTTGTGGCAACATGTGTGGAGAAGGCATCCTAAAAAACTTGAAGCTACTTCAGAAAACAATGCTTCCAGCAATCATTCAACTGATTCTGTGGCTTCCACTCAGAAAAATAATGGATGCTGCGAGAAAAGGAGTGAGGCCCAAAGCACTTGTACATCGCCTATGTTGGAAGCTGAGAGTGCATACATGCAAAATATGCAGGATACGCCCCAGCCCAGGAGTTCTTCAAATTTGAGCATCATTGACACAGTGAAGTATGAAGAGTCTGCAAAACTCAAAAGGGACTCTGCTAGACATAATAATGGAACTATGAAGAGGTCGATTATTTATTCATCAGAGGCTGCTAGGTGCAACAGCATTAGTAACTTCACAAATTTAAGGCTGGAGCAAGACAATTGTGCTGAAACAGAGAATCAGGATGAATCTTTAAGAGCAGAGTTAAATAGAGACAATCCTAATGTTGGTACAGAGGTTCATGGCTGCAAGGATGAATTGGTAGAACCTTCTAGAAGAGCTATTGACTTGATTGCTGCATTTGAGAATATTCCAAAGAATGTTGATGAGAATTATAGTCTTGCTGATGGTGGGAGAGACAAGTTTGATTTTGATCCGCAGTTGGAACTTTCCTTGAGAAAATTTTCTGGTAGCTCATGTAAACAAGAACCTGAGGAAAGGCAAACATTGAACCATTCAGATGCATCTGCCTTTTCTTGGTACAGTGGTAATAAGTTGCCACAGCCCCTTTTTCCAGCATTACAAATGAATTCCGCCGAAGCATATAGCACTGAGCTGAACTCCCAGAATTCTAATGAAATATCTGGAATTGATACTTCTTATCAGTATGGTGGAACAAATCATACTCAGGAGAATACAATCCCACCGGTTCTTCACCAGTCCGGACAAGTTGGAGTACAATTGCCAAACATTGATCCTGGATCCTCTCCTGCTGCAGGTGTTACTTCTGATCATATGTTTAGTGGACATAGGAATGTTGTGCCTTCTATATTCTACACACAATCCAGTGCTCATCCCATATGGAGTCCCAAGTCAGTCAGCCAGAAAGAGAATTCTCCCTTTACCCCAACCACTTCATTCCTGTCAAATGCTGAAAGTCACAACTCAGAACAACATTATCAATGGTCCGATGCCAGTTGTGCTTCTCTTGATAAAAAGACACGGTGTGATAAAAGCTACTTGGATCCTGCAATGCAAGATTATCCAGGTTCTTATCAGAATACCAGCATTAGTTTATGCCATGACACTCCGAACCATCTTAATGATGGTTCATATGGAAGTATAGACCGTATAAGACATGTAGATCATACTTCGGCTGTGGTTAATGAGAAAACCCCTGAAAGCTTTAGTGACATCAGTTATCATGACTATGACGAATACAGAGGGGCAGATTCTCTGCGTCCCAGCCAAAGGGAAGCTGCTCTAACAAAGTTTAGACTGAAGAGGAAAGACCGATGCTTTGAGAAAAAGGTCAGGTATCAAAGCCGGAAAAGACTGGCTGAGCAGCGTCCTCGGATAAAAGGGCAGTTTGTGCGTCGAGTGCAAAATGATTGTCCACCTGTCGATTATGGTGGTGGTTCCTGA 2103 0.4242 MSMLLENMGEAVLASGKKGMEVRLEVEEDMNMMNHLKDESSTKMDKWDKLLPQMALRVLLVEADDSTRQIIAALLRKCSYRVAAVSDGLKAWETLKKKAPDIDLILTEVELPSISGFALLTLIKEHEICRNIPVIMMSSHDSISMAMKCILKGTADFLIKPVRRNVLSTLWQHVWRRHPKKLEATSENNASSNHSTDSVASTQKNNGCCEKRSEAQSTCTSPMLEAESAYMQNMQDTPQPRSSSNLSIIDTVKYEESAKLKRDSARHNNGTMKRSIIYSSEAARCNSISNFTNLRLEQDNCAETENQDESLRAELNRDNPNVGTEVHGCKDELVEPSRRAIDLIAAFENIPKNVDENYSLADGGRDKFDFDPQLELSLRKFSGSSCKQEPEERQTLNHSDASAFSWYSGNKLPQPLFPALQMNSAEAYSTELNSQNSNEISGIDTSYQYGGTNHTQENTIPPVLHQSGQVGVQLPNIDPGSSPAAGVTSDHMFSGHRNVVPSIFYTQSSAHPIWSPKSVSQKENSPFTPTTSFLSNAESHNSEQHYQWSDASCASLDKKTRCDKSYLDPAMQDYPGSYQNTSISLCHDTPNHLNDGSYGSIDRIRHVDHTSAVVNEKTPESFSDISYHDYDEYRGADSLRPSQREAALTKFRLKRKDRCFEKKVRYQSRKRLAEQRPRIKGQFVRRVQNDCPPVDYGGGS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1077 700 Pfam CCT motif 644 686 IPR010402 GO:0005515
Lele42g1077 700 ProSiteProfiles CCT domain profile. 644 686 IPR010402 GO:0005515
Lele42g1077 700 MobiDBLite consensus disorder prediction 185 207 - -
Lele42g1077 700 MobiDBLite consensus disorder prediction 182 207 - -
Lele42g1077 700 Coils Coil 294 314 - -
Lele42g1077 700 SUPERFAMILY CheY-like 56 185 IPR011006 -
Lele42g1077 700 MobiDBLite consensus disorder prediction 515 535 - -
Lele42g1077 700 CDD psREC_PRR 58 161 - -
Lele42g1077 700 PANTHER TWO-COMPONENT RESPONSE REGULATOR 56 300 IPR045279 GO:0009736
Lele42g1077 700 ProSiteProfiles Response regulatory domain profile. 57 175 IPR001789 GO:0000160
Lele42g1077 700 Gene3D - 54 316 - -
Lele42g1077 700 SMART REC_2 56 171 IPR001789 GO:0000160
Lele42g1077 700 Pfam Response regulator receiver domain 58 168 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1077 Lele-ChrLele42 23227910 23232361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1077 643 693 Response Regulator Gene Family AT5G24470 82.353 3.74e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele42g1077 Response_reg 2.5e-21 CL0304