Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1072 ATGGACGCATACTCTTCTGGCGAAGAAGTGTTTGTCAAGACAAGAAAACCATATACAATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATAAGTTCCTAGAAGCTCTAAAGCTCTATGGAAGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGTGCAAATCAGGAGCCATGCACAGAAGTTCTTTTCAAAGTTGGAGAAAGAGGCCCTTGTAAAAGGTGTTCCAATTGGACAATCTATTGACATAGACATACCTCCTCCACGACCCAAAAGAAAACCAAGGAATCCTTATCCTCAGAAGACTAGTGCTGGTACCCAAACATCGCATGGTGGAGGAAAGAATGTAAAACTTCTCGTGTCAGTTTCATCTTCACATTGTAAACAAGCACTGGACTTGGAGAAGGAACCACATCCAGAGGAGTCGCCCCGTTCCTTTGTTACATCAGCAGACAAGAGTTCAATGTCAGTGCCACTGAAAAATCCATGCACCTTAAGGGAGTTCATGCCTTTGGCAAAAGAATTGGTAAGTCGGGATGAAACGGATGAATCTTTTGTCACTGCTGAACTAAGAGAGAATCAGAAGTTGGAGACATGTGCTGAAAGGAAACACACAGAACAGAGTAATGGCACAAGTAAAGCTTCTAAGAGGGAGGATTCTGATGCTTCACATTCAAAATTGGTTCAGAGTAAGAAAACAGATGATCTCAATTGTGCATTGACAATAGAAAGGACGCAAGGAAATCAGAACTACCCAAGACATGTCCCTGTGCACGTTCTTGATGGGAAACTTGGAACGGGTACTCAAAATCCGCCCCAGGATATGTTGTTTCCAGAATCTATATTTCATCCCATGGGTGGCGTTAACAGGCAACCTAATATTTTCACAAATGCATCTGCATCAAATGCGAGTGAAAGTCAAAATAACTCGGCACAATCTTCAATTCATCAATCATTTGCCGCTCATCCTCCTCCATTCTCGCAAATTCAACAGGATCAAGATCACTACCAATCATTTCTTCAAATGTCCTCCACATTTTCAAGTCTTATAGTCTCCACCTTGGTTCAAAACCCTGCAGCACATGCTGCAGCAAGTTTTGCTGCTACATTTGGGCCCTATGCAAATATAGAAACTTCTTCAGAATTTCCAGCATGCTTGCAAGGAGCCTTTCCATCTAGGCAAATTGGCTCTCCTCCAAGTATGGCAGCTATTGCAGCTGCTACCGTGGCTGCTGCAACTGCATGGTGGGCTGCCCATGGATTTCTTCCGTTGTGTGCCCCCTTCCATTCTGCTTTTCCTTGCCCTCCTGCATCAGCTGCAGCAGTTCCATCAATGGATTATGCTGAAATACCAGCAGCCAAAACAGATCAGGGTGGTGAAACTACTCTCGAGACTCCTCTGCAAGATCAGGATCAAGAATGCACGTATGCTCTGCAAGCTCAACATTCAGCTTCTAAATCACCAGCTAATTCTTCCTCAGAGCCAGAGGAAAGTGGAGAAGCTAAGATGGATACTTCATTAAAGGCTGCTGATCATGAGAACAACAAGGCAAATACTGAGCACCTTGACTCAATGAAAGGCAGAAAACTGGTTGACTGTTCCTCATGCGGTTCCAATACCACCTCTAGCAGCGAGGTAGAGACAGATGCATTAGAGAAGAATGAGAAAGAGAAAGAGGAAAACAAAGAACTTGATGCAACCCATTTAGCTATTGATTCCAGATATTGTCGTGCTAGAAGTGCTGGCACCCTTCCTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGAGGTTGGCCTTTCAGGCTCTCTTCACCAGGGAGGTGTTGCCACAGAGCTTTTCTCCTTCCCATGACTTGACAAATCAGGATCATCAGACGGACAACATTGAGGATAACAAGCATAATACGGATGATAAACTAGAAAACATCAGGAAATGCAGTTCTGACTGTAGAGGAGCGGAGAAAAACCTGTCATTCGTCAAAAAACATGATGAGGAAGAGGTACTGCTAACCATAGGGCTTGGACAAGGAAAGCTGAAGACTAGTCGAACAGGGTTTAAACCTTACAAGAGATGTGCAATGGAAGCCAAGGAAAACAGGGTTGGAACTACCGGCAACCAAGATGAAGAGAAAGGTGCCAAGAAAATACGCTTGGAAGCGGAGGCTTCAACATGA 2190 0.4438 MDAYSSGEEVFVKTRKPYTITKQRERWTEEEHNKFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQSIDIDIPPPRPKRKPRNPYPQKTSAGTQTSHGGGKNVKLLVSVSSSHCKQALDLEKEPHPEESPRSFVTSADKSSMSVPLKNPCTLREFMPLAKELVSRDETDESFVTAELRENQKLETCAERKHTEQSNGTSKASKREDSDASHSKLVQSKKTDDLNCALTIERTQGNQNYPRHVPVHVLDGKLGTGTQNPPQDMLFPESIFHPMGGVNRQPNIFTNASASNASESQNNSAQSSIHQSFAAHPPPFSQIQQDQDHYQSFLQMSSTFSSLIVSTLVQNPAAHAAASFAATFGPYANIETSSEFPACLQGAFPSRQIGSPPSMAAIAAATVAAATAWWAAHGFLPLCAPFHSAFPCPPASAAAVPSMDYAEIPAAKTDQGGETTLETPLQDQDQECTYALQAQHSASKSPANSSSEPEESGEAKMDTSLKAADHENNKANTEHLDSMKGRKLVDCSSCGSNTTSSSEVETDALEKNEKEKEENKELDATHLAIDSRYCRARSAGTLPDSWKEVSEEGRLAFQALFTREVLPQSFSPSHDLTNQDHQTDNIEDNKHNTDDKLENIRKCSSDCRGAEKNLSFVKKHDEEEVLLTIGLGQGKLKTSRTGFKPYKRCAMEAKENRVGTTGNQDEEKGAKKIRLEAEAST 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1072 729 Coils Coil 553 573 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 202 236 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 540 569 - -
Lele42g1072 729 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Lele42g1072 729 SMART sant 23 71 IPR001005 -
Lele42g1072 729 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Lele42g1072 729 MobiDBLite consensus disorder prediction 485 518 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 306 339 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 702 729 - -
Lele42g1072 729 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lele42g1072 729 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Lele42g1072 729 CDD SANT 26 69 IPR001005 -
Lele42g1072 729 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Lele42g1072 729 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Lele42g1072 729 PANTHER SWI/SNF COMPLEX-RELATED 8 568 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 105 120 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 618 640 - -
Lele42g1072 729 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Lele42g1072 729 Gene3D - 26 73 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 503 518 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 554 569 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 485 502 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 138 164 - -
Lele42g1072 729 MobiDBLite consensus disorder prediction 85 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1072 Lele-ChrLele42 23183001 23190057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g1072 Myb_DNA-binding 3.2e-13 CL0123