LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g1071	ATGTTAGTTTCTGTTCTTTTTGGAGTACTCCTTGTGAGCTTTCCTTTTTCTTGTGGTTCCTTTGAGAACCAAGACAAGGTGCTAGAACCACCATCTACTAATTTACTTCCCAATTCCTGCAACGAAACATGTGGGAAACACCATGTTCCTTTTCCATTCTACGTGAACTCGTCTTGTGTGTCAATTTCTCATGCTTTCAATCTCACTTGCTCGAATTCCTCTTCGCTTCTGCTCAGAATCGGCTCAGAAAACTACCCAGTGATTGAATTCTTCCCTGATGGTGTCCTTGTGGACTTCCCAGGCACATTATCGTGTCGTCAGTACAATTACCTGAACTCGTTTGGTAAAAGTTTTGTGAGAAATGAACACTTTGGGGTCTCAGTGGATAATGTCATTGGTCTCTATGACTGTGAGGATTCTTCACTGTGCAAAGCAGATTGTGAAACAGATGACTTGCCTGGTTGTGATGGAGACGATGGTGGTGGAGTTGGCTCACTTGGATGCTGCTATCCACTTTCAGACCATAGTATATGGCATGTAGGAGAAGGGTTTTCAGTGTTCTCTGAGTATGGATGCAGGGGATTTTCTAGCTGGGCTGTTCTGAGAGGGTCAAATTCAGGAAAGCGAGGGGTAAAATTGGAATGGGCTATTCCTAAGAACTCATCCATGGAAGTTTGCTCAAGTAATGCAAAATTGGTGAATGCTACATCAGTTGAAGGTGGAGCAAGGTGTATGTGTCTAGATGGATATGTTGGTGATGGATTTGCAAATGGAACTGGATGCTTGCAGGCCTGTGTCAAGGATGAACATGAAGCATATGGTAGTGACTGCTACATCAGAAGAAAAGATCAAAGAAAAATTGTCATCATTGCTGGAATCCTTGGTCCTGTTCTTATTGTTGCCTCCATGCTAGCCCTATTTTATCTCCTTAAAAGAGCACAAAAACCAGTCACGTTTGACAATGACCAGGCTTACTATCACAACACCTCCTTTCAAAAGGCTTGTAGAACTCAATTGTTCAGCCTCCACGAACTAGATGAAGCCACGAAAGGTTTCGCTGAGGATCAGAAACTCATGCACAGCAACAACAATGGTACAATTTTCGCCGGTGTTTTTGGGGATGGATCACATGCAGCTATCCACAAGTTGCAATATGATACTGAGAAAGACCTTATTCAAGTCCTTGCACAAATTGAGGTTCTCTCTGCTATTTCACATAAGAATTTGTCCCGCCTTCTCGGTTGCTGCATGGATTCTGGCTATCCTTCTTTGGTTGTCTATGAGTATCCTTCAAATGGTACCTTGGAGGACCATTTACATCAAAGAAAAGGACATAAACTTTGTTTGGACTGGAACAAAAGATTGACTATTGCTGCAGAAACTGCTAGTGTTCTTGCATTCTTACAATATGACACTTCTCCTCCTATATTCCATCACAACCTTAAACCTGGTTGCATCTTCCTAGATGATGATTTTTCTGTCAAGATTGCAGGATTCAGGCTGGTCAATACCAAATTCAACTATCACTATGACAATAACAACAACATTGAAGGCTTGAATTTCTGCAAGAATGATGTTTATGACATGGGCGTGTTGCTTCTTGACATCATTTCAGGATCAAAGAATAATCACTTGAACAACTCACCAACTCAAGCACTTCAAAAGATTAGGACAGGGAAGCTCGAAGAAATCATCGATCCCTTGCTCTACTACCACGAGCAACCTCGTACTTGCCAAGAACAGATACAGATAATGGCAGACCTTGCAACAAGATGCATGTTGTTTGGTGCAGATGGAAAACTGGGGATGATCGATGTTACAAGGGAGTTGACACACGTAACAAAAGAGAGTGTTGTTGATGGAGGAATCACAAAAGGACCTGTTTTGGAAGTGACATTCTCAAATTCTAGTCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGCATTTTCAGACCAATTTTTCTCTCATTGTCATCGAAAAGAAAGTCTTAAATTTTCCTTTCCCTTGTGTGTCATGTCTTAAGATGAGTCAGCAAGAACAGAATAATACTGAAGCCACCGTTCCCCGTTTAAATCAAAGGATTCTTTCATCTTTGTCAAGAAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGGACCTGATGCTCCCAACATTTTCAATTGTGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATATGAACTTGACAAAAAGACTGGAATGATCAAGGTTGATCGCATTCTGTATTCATCTGTTGTTTATCCTCACAACTATGGCTTCATTCCTCGTACTCTTTGTGAAGATAATGATCCACTTGATGTCTTGATCCTTATGCAGGAGCCGGTTCTTCCTGGTTGTTTCCTGAGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGGGAGAGACCGATGATAAGATTATTGCAGTATGTGCTGATGATCCAGAGTACAAGCACTATAATGACTTCAAAGAACTTCCACCCCATCGCCTCTCTGAGATAAGGCGCTTCTTTGAAGATTACAAGAAGAATGAGAATAAGGAGGTAGCGGTTAATGACTTTTTGCCTCCTTCTACTGCTGTTGAAGCCATCCAGTACTCAATGGATCTTTATGCAGAGTATATTCTGCGCTCCTTGAGGCAATAG	2661	0.4171	MLVSVLFGVLLVSFPFSCGSFENQDKVLEPPSTNLLPNSCNETCGKHHVPFPFYVNSSCVSISHAFNLTCSNSSSLLLRIGSENYPVIEFFPDGVLVDFPGTLSCRQYNYLNSFGKSFVRNEHFGVSVDNVIGLYDCEDSSLCKADCETDDLPGCDGDDGGGVGSLGCCYPLSDHSIWHVGEGFSVFSEYGCRGFSSWAVLRGSNSGKRGVKLEWAIPKNSSMEVCSSNAKLVNATSVEGGARCMCLDGYVGDGFANGTGCLQACVKDEHEAYGSDCYIRRKDQRKIVIIAGILGPVLIVASMLALFYLLKRAQKPVTFDNDQAYYHNTSFQKACRTQLFSLHELDEATKGFAEDQKLMHSNNNGTIFAGVFGDGSHAAIHKLQYDTEKDLIQVLAQIEVLSAISHKNLSRLLGCCMDSGYPSLVVYEYPSNGTLEDHLHQRKGHKLCLDWNKRLTIAAETASVLAFLQYDTSPPIFHHNLKPGCIFLDDDFSVKIAGFRLVNTKFNYHYDNNNNIEGLNFCKNDVYDMGVLLLDIISGSKNNHLNNSPTQALQKIRTGKLEEIIDPLLYYHEQPRTCQEQIQIMADLATRCMLFGADGKLGMIDVTRELTHVTKESVVDGGITKGPVLEVTFSNSSLLQMISMSPDSMHFQTNFSLIVIEKKVLNFPFPCVSCLKMSQQEQNNTEATVPRLNQRILSSLSRRSVAAHPWHDLEIGPDAPNIFNCVVEITKGSKVKYELDKKTGMIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLILMQEPVLPGCFLRARAIGLMPMIDQGETDDKIIAVCADDPEYKHYNDFKELPPHRLSEIRRFFEDYKKNENKEVAVNDFLPPSTAVEAIQYSMDLYAEYILRSLRQ	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g1071	886	Gene3D	Inorganic pyrophosphatase	704	882	IPR036649	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele42g1071	886	Pfam	Wall-associated receptor kinase galacturonan-binding	40	89	IPR025287	GO:0030247
	Lele42g1071	886	Gene3D	Transferase(Phosphotransferase) domain 1	431	621	-	-
	Lele42g1071	886	ProSiteProfiles	Protein kinase domain profile.	353	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele42g1071	886	Pfam	Protein tyrosine and serine/threonine kinase	373	560	IPR001245	GO:0004672\|GO:0006468
	Lele42g1071	886	CDD	pyrophosphatase	721	874	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele42g1071	886	Hamap	Inorganic pyrophosphatase [ppa].	721	877	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele42g1071	886	SUPERFAMILY	Inorganic pyrophosphatase	702	881	IPR036649	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele42g1071	886	FunFam	Soluble inorganic pyrophosphatase 4	704	882	-	-
	Lele42g1071	886	PANTHER	INORGANIC PYROPHOSPHATASE	669	885	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele42g1071	886	Pfam	Inorganic pyrophosphatase	725	876	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele42g1071	886	SUPERFAMILY	Protein kinase-like (PK-like)	337	610	IPR011009	-
	Lele42g1071	886	ProSitePatterns	Inorganic pyrophosphatase signature.	772	778	-	-
	Lele42g1071	886	Gene3D	Phosphorylase Kinase; domain 1	323	429	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g1071	Lele-ChrLele42	23170119	23176855	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g1071	211	613	Receptor kinase-like Gene Family	AT2G23450	33.019	3.89e-53	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-3	Lele42g1071		PK_Tyr_Ser-Thr	2.3e-15	CL0016