Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1070 ATGGGGGATGGAGGTATTAGGGATTCGGGGGCAATTGACGATGGCCAAGAAGTAACTCGCTCCTCTCCCTCCTACTGGCTGGACGCTTGTGAGGACATTTCCTGTGATCTCATTCACTTCGATGATGGGTCCATAGTCTCAGAACAGGTCGATAACAATCTGATACAGGATGGACTGGTTAACGATTTCTTCGGTGGCATTGATAGCATTCTTGACAGTATTAAGAACGGCAGTGGCCTCCCTGTGGCCACTGAGACTGAAAATGGAAACCAAGATTTTGCGTTGGCACTGCAAGCTGAAATCTCCGATCAGAAAGATAATATTGGGAAGAATGGGTTTGCTGGTGAAAAACATGGTCGTGCTGTTGAAGTGTGGGAGCGTTCAGAAGCTGAAAGTAATGGGTATAAAGTATCTAATGCCAATGAAGAAGGGAGAACTTTGGGTGATTTTAAGGAAAATGGAGGTGGTGATCTATCTAGGGAGCATCATGTGGATGGTGAAGAAAGATTTGGCAAGAGGGCTCGGCTTGGCGGTTATAAGAATGAGAGGCTTTATCCGGGCAGAGGGAATTACCACCCCAAGGAGAGGGAGAGGTGTCCTAATAGAAAGAGGCCCCGGGAGTGGGATGAGGTTGATAGGAAGGAAAAAGATAGTGTGAGGAGAAGAGAAAATTTCAATGGTTGTGGTAGGAGAGATGTTAGAGACAGGGACTGGAGGGATAGAGAAAAGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGACATGGTCTTTCGCTATGGCACTTGGGAAGCTGATCGATATCGAGAAGGTAAGGTTGCTAATGACACTAAACAAGAATGCACTGGAAAGATTGAGACTAAAACTGAGGAGCCAAAGGAGAGAGTTCCTGAGGAAAAAGCTAGAAAGTACCAGTTAGATGTTCTTGAGCAGGCAAAGCAGAGAAATACTATAGCTTTTCTTGAAACTGGGGCAGGGAAGACCCTCATTGCTGTTCTTCTCATGAAAAGTATTCATGAGAGTTTACAAAAGCAGAATAAAAAAATGCTTGCAGTATTTTTAGTTCCCAAAGTACCGCTTGTTTATCAGCAAGCAGAAGTAATTCGAGAGCGAACTGGCTGCCAAGTGGGTCACTACTGTGGAGAAATGGGGCAGGACTTCTGGGATGCTCGAAGGTGGCAACGTGAATTTGAAACAAAACAGGTTCTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACACCCTTATTCACTGGTGATGTCGGAGTTCTATCATATGACACCCAAAGAGAAGAGACCATCTGTTTTTGGAATGACTGCTTCTCCTGTTAACTTGAAAGGTGTATCAAGCCAAGTGGATTGTGCAATAAAAATAAGGAATCTTGAAAGTAAGCTAGATTCTGTAGTTTGTACCATTACAGATCGTAAGGAGCTGGAGAAGCATGTACCGATGCCTTCTGAAGTTGTGGTGGAGTATGACAAAGCAGCTAGCTTGTGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGTTCAAGAAGAAGTAAATGGCAGTTCATGGGAGCTAGAGATGCAGGAGCCAAAGAAGAGCTCCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAATTGAGAGCTATCAATTATGCACTTGGTGAGCTGGGTCAGTGGTGTGCTTATAAGGTTGCACATTCTTTTCTATCAGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCCTATCTGAATAAACTCGTGTCTCTTCTACAATGTCAACTGTTAGAGGGTGCCGTGTCTGACAAAAATGCTGGAGTTTCTGACTCAGAATGTCGTATGGCACAGGGTGGTTCTGAACCTGATGATATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTGTCTGGAGGGGAGCATGTGGATGTCATTATTGGAGCTGCTGTGGCGGATGGCAAGGTGACCCCTAAGGTTCAGGCTTTGATAAAAATACTTCTCAAGTATCAGCATACAGAAGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCTTTAGTTCTACCCAAGGTTTTTGCAGAGCTTCCATCTCTGGGTTTTGTTAAGTGTGCGAGCTTGATTGGCCACAACAATAGTCAGGAAATGAGGACCTCACAAATGCAGGATACAATTGCTAGGTTCCGTGATGGACGAGTTACATTGTTAGTTGCAACTAGTGTTGCTGAAGAAGGACTTGATATAAGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCTAGAGGTCGTGCCAGAAAGCCTGGGTCTGATTATATCTTGATGGTTGAGAGGGGAAACTTGTCGCATGAAGCATTTCTAAAGAATGCCAGGGATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTAAGTCATCTTAAAGACACTTCAAGGTTGATTTCAGTAGATACAAGACCAGGATCTGTTTACCAGGTGGAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCCGTTGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTCCGTCCTGAGTTTATAATGGAGAAGCATGAAAAACCAGGAGGTCCCACTGAATATTCTTGCAAGCTTCAATTGCCATGTAATGCACCATTCGAAAATCTTGAGGGTCCGATATGCAGTTCAATGCGCCTTGCTCAACAGGCTGTTTGTCTAGCTGCTTGCAAGAAGCTGCATGAGATGGGTGCGTTCACTGACATGCTGTTGCCAGACAAAGGAAGTGGAGAAGAAAGAGAAAAGGATGAGCAAAATGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGAGAGTTTTATCCTGAAGGTGTTGCGGACGTACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAGCAATTCCAAAGTGCTTCATCTTTATATGTATGCTGTTATGAGTGAAAACATAGGCTATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAACTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCACGAACCATGACTACAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGATATTACTGAGAGTCAGTTGGCATCCTTAAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACTCCTTGGGATTCTGCAAAAGCATATTTATTTGTTCCAATGGTTAGCGATAAGCCTTTAGATCCTATGAACCAGATTGACTGGCATTTGGTTGAGACAGTAATTGAAACAGATGCATGGAAAACTCCACTTCAGAAGGCTCGACCAGATGTTTATCTGGGCACAAATGAGAGAACTTTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAACCACACCCAACCTATGGGATCAGAGGAGCTGTTGCACAGTTTGATATAGTAAAAGCTTCAGGATTGGTTCCTAATCGGCAAGCCGTGCAAATGCAAAAACATATTAATAAGACTGCTCAAGGGAAATTGATGATGGCAGATACCTGTACTAACGCAGAGGATCTGATAGGGAGGATAGTTACAGCTGCTCACTCGGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGACTGCAGAGAACTCTTTTCCTAGGAAAGAAGGCTATCTTGGTCCTCTGGAGTACAGTTCGTATGCTGACTACTACAAACAAAAGTATGGTGTTGATTTAATTTACAAGCAGCAACCTCTTATAAGAGGACGGGGTGTATCATACTGCAAGAATCTTTTATCCCCTCGATTTGAACACAGTGAAACAGATGAAATCGAATCTGAAGAGGCTCATGACAAAACTTATTATGTCTTTCTTCCTCCTGAGCTATGCCTTGTGCACCCCCTGCCTGGATCACTTGTTCGTGGGGCACAGAGGCTGCCTTCAATAATGAGGAGGGTCGAAAGTATGCTTCTGGCAATTCAACTCAAGAATATGATAAATTATCCTGTCCAGTCTTCCAAGATATTGGAGGCCTTGACTGCTGCCTCCTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCATATCTCAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAGTACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGATATTATATCAGTATGCATTGAGCAAAGGACTTCAATCATACATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGAGTGCTGCCTGTATTTGATGAGGATACCAGGGATGGGGAGTCATCTTTATTTGATCAAGAGGGGTTGATTCCAAAGACGGAGAAGATTGGTCACCTTTCTGATGGATTTGAGGATGATGAAATGGAAGATGGTGAGCTTGAGAGCGATTCAAGTGCTTATAGAGTCCTCTCCAGCAAGACACTTGCAGATGTTGTAGAAGCTCTGATTGGGGTGTATTATGTTGAAGGTGGGAAGAATGCTGCGAATCATCTTATGAAATGGATCGGCATTCAGATAGAGTTTGATCCTGATAAGATGGAGTGTGCAAGGAAGCCAAATACTGTTCCTGAGAGCATACTTAGGAGTGTTAACTTTGATGCTTTGGAAGGTGTTTTGAATATCAAGTTTAGAGACAAGGGGCTGCTTATAGAAGCAATAACTCATGCATCAAGACCATCCTCTGGAGTATCCTGTTATCAGCGGTTAGAGTTTGTTGGTGATGCTGTCTTGGATCATCTCATTACTAGGCACTTGTTTTTCACTTACACAGATCTGCCACCAGGACGTTTGACTGACCTCCGAGCTGCTGCTGTAAACAATGAAAACTTTGCACGTGTGGCTGTTAAACACAGTCTTCATGTTCATCTTCGACATGGGTCCAGTGCCCTAGAAAAACAGATTACGGAATTTGTAAAGGAAGTTCAAGAAGAATTGTCAAAGCCAGGGTTCAACTCCTTTGGCTTGGGAGATTGCAAAGCACCCAAAGTCCTTGGTGACATTGTTGAATCTATTGCCGGTGCCATTTTTCTTGACAGTGGTCGAGATACTTCCGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTGACGCCTGAGACTCTGCCAATGCATCCTGTGCGGGAGCTACAAGAACGATGCCAGCAGCAGGCAGAGGGCTTAGAATATAGAGCCTGTCGAATTGGAAATTTGGCTACTGTCGAAGTATTCATCGATGGCGTGCAAGTGGGGGCTGCTCGAAATCCTCAGAAGAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGTAGCCACCAAAACTAAGGAGAAGGATGATGAAAATGGTAAGAAGAAGAAGAATGGAAACCAGACATTCACCAGACAAACATTAAACGACATCTGTTTGCGGAGAAATTGGCCTATGCCATTCTACCGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGATTTACATTTGCAGTTCGTGTCAATACTACTGATAGAGGATGGACAGATGAATGTATTGGAGAACCAATGCCAAGCGTGAAAAAAGCCAAGGATTCTGCTGCTGTTCTTCTCCTAGAACTACTAAATAAATTGTACTCGTAA 5895 0.4348 MGDGGIRDSGAIDDGQEVTRSSPSYWLDACEDISCDLIHFDDGSIVSEQVDNNLIQDGLVNDFFGGIDSILDSIKNGSGLPVATETENGNQDFALALQAEISDQKDNIGKNGFAGEKHGRAVEVWERSEAESNGYKVSNANEEGRTLGDFKENGGGDLSREHHVDGEERFGKRARLGGYKNERLYPGRGNYHPKERERCPNRKRPREWDEVDRKEKDSVRRRENFNGCGRRDVRDRDWRDREKGYWERDKSGSNDMVFRYGTWEADRYREGKVANDTKQECTGKIETKTEEPKERVPEEKARKYQLDVLEQAKQRNTIAFLETGAGKTLIAVLLMKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGCQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHMTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTITDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLNKLVSLLQCQLLEGAVSDKNAGVSDSECRMAQGGSEPDDIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLGFVKCASLIGHNNSQEMRTSQMQDTIARFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARDSEETLRREAIERTDLSHLKDTSRLISVDTRPGSVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKDEQNDEGDPLPGTARHREFYPEGVADVLKGEWILSGKDACSNSKVLHLYMYAVMSENIGYSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVSDKPLDPMNQIDWHLVETVIETDAWKTPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKPHPTYGIRGAVAQFDIVKASGLVPNRQAVQMQKHINKTAQGKLMMADTCTNAEDLIGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSETDEIESEEAHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTRDGESSLFDQEGLIPKTEKIGHLSDGFEDDEMEDGELESDSSAYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDKMECARKPNTVPESILRSVNFDALEGVLNIKFRDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHSLHVHLRHGSSALEKQITEFVKEVQEELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGAARNPQKKMAQKLAARNALAALKEKEVATKTKEKDDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS 1964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1070 1964 CDD SF2_C_dicer 701 831 - -
Lele42g1070 1964 MobiDBLite consensus disorder prediction 1862 1881 - -
Lele42g1070 1964 Pfam Type III restriction enzyme, res subunit 307 467 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele42g1070 1964 Gene3D Ribonuclease III domain 1401 1597 IPR036389 GO:0004525|GO:0006396
Lele42g1070 1964 Gene3D Ribonuclease III domain 1618 1793 IPR036389 GO:0004525|GO:0006396
Lele42g1070 1964 FunFam Endoribonuclease dicer-like protein 296 536 - -
Lele42g1070 1964 ProSiteProfiles Ribonuclease III family domain profile. 1624 1772 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1798 1861 IPR014720 -
Lele42g1070 1964 Gene3D Dicer dimerisation domain 891 994 IPR038248 -
Lele42g1070 1964 SMART PAZ_2_a_3 1242 1403 IPR003100 GO:0005515
Lele42g1070 1964 FunFam Endoribonuclease dicer-like protein 1401 1595 - -
Lele42g1070 1964 MobiDBLite consensus disorder prediction 139 168 - -
Lele42g1070 1964 FunFam endoribonuclease Dicer homolog 1 1892 1961 - -
Lele42g1070 1964 CDD RIBOc 1418 1601 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 SUPERFAMILY PAZ domain 1258 1379 IPR036085 GO:0005515
Lele42g1070 1964 ProSitePatterns Ribonuclease III family signature. 1659 1667 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 SMART helicmild6 737 823 IPR001650 -
Lele42g1070 1964 CDD PAZ_CAF_like 1232 1381 - -
Lele42g1070 1964 Gene3D - 1796 1874 - -
Lele42g1070 1964 FunFam Endoribonuclease dicer-like 1 1619 1793 - -
Lele42g1070 1964 Pfam Dicer dimerisation domain 896 984 - -
Lele42g1070 1964 MobiDBLite consensus disorder prediction 181 215 - -
Lele42g1070 1964 Pfam Helicase conserved C-terminal domain 704 821 IPR001650 -
Lele42g1070 1964 SMART ultradead3 297 500 IPR014001 -
Lele42g1070 1964 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 896 991 IPR005034 GO:0016891
Lele42g1070 1964 PANTHER DICER-RELATED 1253 1865 - -
Lele42g1070 1964 FunFam Endoribonuclease Dicer 1 1259 1377 - -
Lele42g1070 1964 CDD DEXHc_dicer 300 499 - -
Lele42g1070 1964 CDD DSRM_DCL_plant 1892 1953 - -
Lele42g1070 1964 Gene3D paz domain 1257 1377 - -
Lele42g1070 1964 Gene3D - 694 859 IPR027417 -
Lele42g1070 1964 Pfam PAZ domain 1255 1399 IPR003100 GO:0005515
Lele42g1070 1964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 834 IPR027417 -
Lele42g1070 1964 MobiDBLite consensus disorder prediction 1862 1884 - -
Lele42g1070 1964 SMART DRBM_3 1887 1960 IPR014720 -
Lele42g1070 1964 SMART DRBM_3 1799 1860 IPR014720 -
Lele42g1070 1964 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1886 1959 - -
Lele42g1070 1964 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1886 1961 IPR014720 -
Lele42g1070 1964 SUPERFAMILY dsRNA-binding domain-like 1754 1861 - -
Lele42g1070 1964 SUPERFAMILY dsRNA-binding domain-like 1890 1960 - -
Lele42g1070 1964 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 485 IPR014001 -
Lele42g1070 1964 Pfam Ribonuclease III domain 1436 1583 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 Pfam Ribonuclease III domain 1659 1772 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 MobiDBLite consensus disorder prediction 981 1009 - -
Lele42g1070 1964 MobiDBLite consensus disorder prediction 145 168 - -
Lele42g1070 1964 SUPERFAMILY RNase III domain-like 1623 1794 IPR036389 GO:0004525|GO:0006396
Lele42g1070 1964 MobiDBLite consensus disorder prediction 187 215 - -
Lele42g1070 1964 SMART riboneu5 1639 1795 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 SMART riboneu5 1418 1603 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 FunFam Endoribonuclease dicer-like 1 695 857 - -
Lele42g1070 1964 ProSiteProfiles PAZ domain profile. 1239 1379 IPR003100 GO:0005515
Lele42g1070 1964 Gene3D - 295 539 IPR027417 -
Lele42g1070 1964 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 868 IPR001650 -
Lele42g1070 1964 ProSiteProfiles Ribonuclease III family domain profile. 1422 1583 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 SUPERFAMILY RNase III domain-like 1395 1601 IPR036389 GO:0004525|GO:0006396
Lele42g1070 1964 CDD RIBOc 1640 1795 IPR000999 GO:0004525|GO:0006396
Lele42g1070 1964 Gene3D - 1892 1962 - -
Lele42g1070 1964 MobiDBLite consensus disorder prediction 984 1009 - -
Lele42g1070 1964 FunFam Endoribonuclease dicer-like 1 891 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1070 Lele-ChrLele42 23159669 23169069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1070 720 863 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.23e-06 51.6