LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g1069	ATGGAATTGCTGATGCAAGATGTCAAAATGCATTTTGATGATAAAGAAGAAGACGAGGAGGAGGAGGAAGAAGCAGAGATAGTTAGAGAGGAAAGCGGCAACTGTAAGAATTACCTTTCTTTCTCACCAAATTACGAAACTAGTAGTCGTCGTCTTCATCATAATCATCATGAACCAAATCAAAATTCATGGTTGGGGCTTCATGATCATCATCACTCTCCACCAGATGCTGCTACAGCCGTCGAATCTCGCAATTCATCCCCTCGATTAGGGTTAGCATCAGCACCGACCGCCAATTTCGCGGGTAATCACAGAAAGCTCGACCTCATGGGCTTGTCGCTCGGAGGAATTGGAACCAGCAAGGACGATGAAGAACAAGAAAAAGCTAATTTCCATGGAGGAGGAAGCAGCAGTAACGATGTTGGTGCTTCTATGGAGAAAGAGCACATGTTCGATAAAGTCGTCACTCCCAGTGACGTAGGCAAGCTCAACCGCCTCGTAATACCCAAGCAACACGCAGAGAAGTACTTCCCTCTCGATTCCTCCTCCAACGAGAAAGGGCTGCTCTTGAATTTCGAGGACCGGAGCGGCAAGCTATGGCGGTTCCGGTACTCTTACTGGAATAGTAGCCAGAGCTATGTCATGACCAAAGGTTGGAGCCGTTTCGTCAAGGAGAAGAAGCTCGTCGCCGGAGACATTGTCTCGTTCCACCGCGGCGCCGGAGAGTCATATCTGCACCGGTTGTACATAGATTGGAGGCGAAGACCTGATCCCGGCCCACCCGGACCTGATCTCAACTTGATTACACCTTTTTTTCTTCATCACCCCAATCAGCCGACGACGCAATTTTCTCAGTACTCCATCAGATGGGGCGGCCGATTGTTCTCTCTTCCCTCTCCGGCGGCGCCGCCTCCGCGACAGCTGGACCATAGTAATATGTTTCCCTTATATTATCATCAACAGCAACAACAAGAGCGACATCATCATCATCATCCATGGCAGCACCAAGTCCATCAACATCATCATAATGCGATGGATTCAAGATCTGCAGATTCGGTGTATTCGAACTTGATAGGGCAACAGGAAGTAAGAAATGTTCCGATGATTATAGATTCTGTTCCAGTTGATCATTATCATCATTCTCATCAAAACTATTACCGTGGTAAAAGTAGTAGTACTACTGCTGGTAAGACACTTAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGTCGTCGTCTTCTTCATCACCATCAGTAGAGGAATCGAGATGTTGTAATGTGACAGTAATGGCTAATCCATCAATTTCATCTTCGTCTTCTATTATCCCACCGCCTCTTCATCAGTATCTGAGAGTACCCCATTATGAGGATCATCATCCAATTTCATCGTCAAAAGCTCGTTACTTTCTTCTTTTCTCTAATGTTTCTGTTAAGCTTGTTGGGTTGATGTGTGTTGTTTCTGCTGCTTCTGCTTCTTCTGCTGCTGGGTATGGCATTTTTTAG	1506	0.4615	MELLMQDVKMHFDDKEEDEEEEEEAEIVREESGNCKNYLSFSPNYETSSRRLHHNHHEPNQNSWLGLHDHHHSPPDAATAVESRNSSPRLGLASAPTANFAGNHRKLDLMGLSLGGIGTSKDDEEQEKANFHGGGSSSNDVGASMEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRSGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDIVSFHRGAGESYLHRLYIDWRRRPDPGPPGPDLNLITPFFLHHPNQPTTQFSQYSIRWGGRLFSLPSPAAPPPRQLDHSNMFPLYYHQQQQQERHHHHHPWQHQVHQHHHNAMDSRSADSVYSNLIGQQEVRNVPMIIDSVPVDHYHHSHQNYYRGKSSSTTAGKTLRLFGVNMECASSSSSSSSPSVEESRCCNVTVMANPSISSSSSIIPPPLHQYLRVPHYEDHHPISSSKARYFLLFSNVSVKLVGLMCVVSAASASSAAGYGIF	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g1069	501	ProSiteProfiles	B3 DNA-binding domain profile.	151	253	IPR003340	GO:0003677
	Lele42g1069	501	SUPERFAMILY	DNA-binding pseudobarrel domain	148	251	IPR015300	-
	Lele42g1069	501	Pfam	B3 DNA binding domain	151	254	IPR003340	GO:0003677
	Lele42g1069	501	MobiDBLite	consensus disorder prediction	118	141	-	-
	Lele42g1069	501	MobiDBLite	consensus disorder prediction	50	91	-	-
	Lele42g1069	501	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	13	418	IPR044800	GO:0003700
	Lele42g1069	501	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele42g1069	501	CDD	B3_DNA	149	246	IPR003340	GO:0003677
	Lele42g1069	501	SMART	B3_2	151	256	IPR003340	GO:0003677
	Lele42g1069	501	FunFam	B3 domain-containing protein	144	260	-	-
	Lele42g1069	501	Gene3D	-	144	258	IPR015300	-
	Lele42g1069	501	MobiDBLite	consensus disorder prediction	50	77	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g1069	Lele-ChrLele42	23139961	23141936	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g1069	123	415	RAV Transcription Factor Family	AT2G46870	48.649	4.48e-71	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Lele42g1069		B3	9.2e-28	CL0405