Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1061 ATGAAGAAAGATCCCCAAGACGACGTATTTCCCTTCTGGGTTTCTGTTCTGATGACACTTGAAGCTTCCACGCAAAGACAAAGACCAAACCCATCAACATCAGCTTCTGCAACAAGACCCTCCACCATTCTCAGGGATACGAGGTTCATGGCCTTTCTCATAGTACCGTTAGTTCTTCTGTCTTTCCTCGTTGTCGCTGTCTCCTCTTCTTGTACCCAATTGGATCAAGAGTCTCTCTTGGACTTCTACAACAATATATCCACACAACCCCACCCTCCTCTTAATTGGTCTTCTTCTGTTGATTGCTGCTCTTGGGAAGGTATTCTTTGCGATGAGAGGAATATGGGTGATAGGGATCAGCGAGTTATTGGCTTATTGCTTCCTTCCAGAGGTCTCGCTGGTTCTGTATCCCCTGCTCTCATGAAACTCACAGGTCTGTCTCAGCTCAATCTCTCCCATAATCGACTTTCTGGTAATCTCCCAACCCAATTCTTCTCACTCCTTAGTCACCTGCACATTCTTGATTTAAGCTACAATCGTCTCTCTGATGAATTGCCAGCATCTGTTGTTAATAATAACAAAACCAGTAGTATTATCCAGGAGCTTGATTTGTCTAGCAATCTATTTCAAGGAACACTCCCTTCTTCTTTCCTTCAGTACCTTGAAGCTGCTGCAGCAGCAGGGACTTTGACATCTTTTAATGTTAGTAACAATAGCTTCATAGGTCCAATTCCCACTTCTCAGCTTTGCATTAATGAGACTGACTCCGCTCTCAGATTCTTGGATCTTTCCTACAATAAATTCAACGGTTCAATTCAATCTGGATTGGGAGCATGCTCCAAGCTTGAGATTTTTCGCGCAGGTTTCAATTCTATCTCTGGGCCTCTTCCCGGTGATATTTTCCATGCCGTTTCCCTCAGGGAGATCTCCTTGCCCCTCAATCAACTCTCTGGAAATATTGATGATGGAATTGCTAACCTTACCAACCTCACAGTCCTGGAGCTCTACTCCAATGATTTCAGAGGATCCATACCCCGAGATATTGGAAAGCTATCCAAGCTGGAAAAGCTACTTCTTCATATAAACAATTTGACGGGTGCTTTACCCCCATCTCTGGTTAACTGTGTCAATCTTGTTGAGTTAAATTTGAGGGTCAACCTCTTGAAGGGGAAGCTTGCAGAATTTAATTTCTCCGGATTCCAGCGGCTTACTATGCTTGATCTCGGAAACAATAATTTTACGGGCAATTTACCAACAACCCTTTATGCATGCAAATCACTGGCTGCAGTAAGGCTAGCATCTAATCAGCTTGATGGACAGATCACCCCGGATATACTTGGACTTGAGTCTCTGTCTTTTCTAGCAATATCTACCAACTCCCTGAGTAATTTCACAGCAGCTATGAAGATACTCGGGGGCCTCAAGAACCTTAGTAGCCTTGTCCTCTCAAAGAATTTTTATAATGAAACCATCCCGTATGATGAGAACTTAGTAGGCCCAGATGGATTTCAAAAACTCCAGGTTCTAGCCTTGGGTGGTTGTAATTTCACAGGTCAAGTACCAGGCTGGCTTGCAAGGCTTAGGATGCTCGAGGTCATTGATCTGTCCTATAATCTCATCACTGGTTCAATTCCTCCATGGTTGGGTAAACTTCCACAGCTATTCTACATAGACTTGTCTCATAACCAACTTACAGGAGCATTTCCCACGGAACTCACAGGACTTCATGCATTAACATCACAAGAGGCGAATGATAGAATAGAAAGGTCTTACCTGGAGTTACCCGTCTTCATTGTGCCGAACAATGCTTCTCAGCAGCAGTATAATCAGCTTTCCAACCTTCCACCAGCAATATATCTGAGAAACAATAGTCTCCGTGGCAATATGCCTATGGAGATTGGCCTAATGAAAGTCCTACATCATCTGGATCTGGGTAATAACAACTTCTCTGGCAGTATTCCAGTTCAAATTTCTAACTTGACTAATTTAGAGAAGCTAGACCTCTCAGGAAACCGACTATCTGGTGAAATTCCTGCTTCACTCAAGAACCTGCATTTTTTGTCATTTTTTACTGTGGCATACAATGATCTTCTTGGAGAGATACCAACAGGTGGCCAATTTGATACTTTCCCTCCTTCCAGCTTTGCAGGAAACCCACGATTGTGCGGGTCATCTATACAACGTTCTTGCCCTAGTACACAAGGTAACAGGGCAACTCATCGCACTTCAAACAGAAAAATCTTGATTGGACTTGTTATCGCAGTCTGTTTGGGCACTGTTGCTATCATGATTGTGTTGGTAATCTGGATACTTTCCAAGAGGAGGATCAATCCAGGGGGAGATCCAGACAAGATTGAACTGGAATCAATTTCTGCCCACTCCAATAGTGGTGTTCATCCTGAAGTTGATAAGGAGGCTAGTCTAGTGGTAATGTTTCCCAATAAAACAAATGAAATCAAAGATCTTGACATATTTGAGATCTTAAAGGCCACTGAAAATTTCAGTCAAGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACGTTACCCGATGGAACTAAGCTAGCTATCAAGAAACTTTCAGGAGATATGGGGCTTATGGAAAGGGAATTTAAAGCTGAGGTAGAGGCTTTGTCAACAGCCCGACATGAGAACTTGGTTGCATTGCAAGGTTACTGTGTACATGATGGCTTTCGGCTTCTCATATACTCTTACATGGAAAATGGAAGTCTGGATTATTTGTTGCATGAGAAGCCTGATGGTGCAACACAACTTGATTGGCCAACTCGACTGAAGATAGCACGGGGTGCGAGTTGTGGGTTGGCTTACATGCATCAGATATGCGAACCACACATTGTCCATCGTGATATAAAGTCAAGCAACATCCTCCTTAATGAGAAGTTTGAGGCACATGTTGCTGATTTTGGCTTGTCTCGGTTGATTCTTCCATATCACACTCATGTTACAACTGAACTTGTAGGTACGTTAGGTTACATTCCCCCTGAGTATGGACAAGCATGGGTTGCCACTCTTAGGGGAGATGTGTACAGCTTTGGAGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGACCTGTTGACATATGCAAGCCAAAAATGTCAAGGGAATTGGTTGGCTGGGTGCAACAAATGAGGAGTGAAGGAAAACAGGACGAAGTTTTCGACCCTCTTTTGAGAGGAAAGGGCTTTGAAGAGGAGATGCTGCAGGTACTTGATGTGGCCTGCATGTGTGTCAACCTGAATCCTTTCAAGAGGCCAAGCATCAGAGAAGTTGTTGATTGGTTGAAGAATGTAGGATCAGCCAAACAACAACAGAATAAAGAGTAG 3357 0.434 MKKDPQDDVFPFWVSVLMTLEASTQRQRPNPSTSASATRPSTILRDTRFMAFLIVPLVLLSFLVVAVSSSCTQLDQESLLDFYNNISTQPHPPLNWSSSVDCCSWEGILCDERNMGDRDQRVIGLLLPSRGLAGSVSPALMKLTGLSQLNLSHNRLSGNLPTQFFSLLSHLHILDLSYNRLSDELPASVVNNNKTSSIIQELDLSSNLFQGTLPSSFLQYLEAAAAAGTLTSFNVSNNSFIGPIPTSQLCINETDSALRFLDLSYNKFNGSIQSGLGACSKLEIFRAGFNSISGPLPGDIFHAVSLREISLPLNQLSGNIDDGIANLTNLTVLELYSNDFRGSIPRDIGKLSKLEKLLLHINNLTGALPPSLVNCVNLVELNLRVNLLKGKLAEFNFSGFQRLTMLDLGNNNFTGNLPTTLYACKSLAAVRLASNQLDGQITPDILGLESLSFLAISTNSLSNFTAAMKILGGLKNLSSLVLSKNFYNETIPYDENLVGPDGFQKLQVLALGGCNFTGQVPGWLARLRMLEVIDLSYNLITGSIPPWLGKLPQLFYIDLSHNQLTGAFPTELTGLHALTSQEANDRIERSYLELPVFIVPNNASQQQYNQLSNLPPAIYLRNNSLRGNMPMEIGLMKVLHHLDLGNNNFSGSIPVQISNLTNLEKLDLSGNRLSGEIPASLKNLHFLSFFTVAYNDLLGEIPTGGQFDTFPPSSFAGNPRLCGSSIQRSCPSTQGNRATHRTSNRKILIGLVIAVCLGTVAIMIVLVIWILSKRRINPGGDPDKIELESISAHSNSGVHPEVDKEASLVVMFPNKTNEIKDLDIFEILKATENFSQANIIGCGGFGLVYKATLPDGTKLAIKKLSGDMGLMEREFKAEVEALSTARHENLVALQGYCVHDGFRLLIYSYMENGSLDYLLHEKPDGATQLDWPTRLKIARGASCGLAYMHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDICKPKMSRELVGWVQQMRSEGKQDEVFDPLLRGKGFEEEMLQVLDVACMCVNLNPFKRPSIREVVDWLKNVGSAKQQQNKE 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1061 1118 ProSitePatterns Protein kinases ATP-binding region signature. 840 863 IPR017441 GO:0005524
Lele42g1061 1118 Gene3D Ribonuclease Inhibitor 467 738 IPR032675 -
Lele42g1061 1118 ProSiteProfiles Leucine-rich repeat profile. 662 685 IPR001611 GO:0005515
Lele42g1061 1118 SUPERFAMILY RNI-like 98 348 - -
Lele42g1061 1118 Gene3D Phosphorylase Kinase; domain 1 795 909 - -
Lele42g1061 1118 ProSiteProfiles Protein kinase domain profile. 834 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1061 1118 Pfam Leucine Rich repeat 169 184 IPR001611 GO:0005515
Lele42g1061 1118 SUPERFAMILY Protein kinase-like (PK-like) 820 1105 IPR011009 -
Lele42g1061 1118 SMART LRR_typ_2 636 659 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 400 424 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 351 375 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 327 350 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 660 683 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 168 192 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 527 551 IPR003591 -
Lele42g1061 1118 SMART LRR_typ_2 143 167 IPR003591 -
Lele42g1061 1118 Gene3D Transferase(Phosphotransferase) domain 1 910 1118 - -
Lele42g1061 1118 Gene3D Ribonuclease Inhibitor 368 466 IPR032675 -
Lele42g1061 1118 FunFam Leucine-rich repeat receptor-like kinase 75 198 - -
Lele42g1061 1118 Pfam Leucine rich repeat N-terminal domain 75 111 IPR013210 -
Lele42g1061 1118 FunFam Tyrosine-sulfated glycopeptide receptor 1 397 735 - -
Lele42g1061 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 297 392 - -
Lele42g1061 1118 FunFam Leucine-rich repeat receptor-like protein kinase 910 1116 - -
Lele42g1061 1118 SMART serkin_6 834 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1061 1118 PRINTS Leucine-rich repeat signature 660 673 - -
Lele42g1061 1118 PRINTS Leucine-rich repeat signature 554 567 - -
Lele42g1061 1118 SMART LRR_sd22_2 168 204 - -
Lele42g1061 1118 SMART LRR_sd22_2 143 162 - -
Lele42g1061 1118 SMART LRR_sd22_2 327 356 - -
Lele42g1061 1118 SMART LRR_sd22_2 660 686 - -
Lele42g1061 1118 SMART LRR_sd22_2 551 577 - -
Lele42g1061 1118 Pfam Leucine Rich Repeat 662 684 IPR001611 GO:0005515
Lele42g1061 1118 Gene3D Ribonuclease Inhibitor 72 367 IPR032675 -
Lele42g1061 1118 Pfam Protein kinase domain 835 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1061 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Lele42g1061 1118 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Lele42g1061 1118 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 305 1106 - -
Lele42g1061 1118 SUPERFAMILY L domain-like 322 718 - -
Lele42g1061 1118 FunFam Leucine-rich repeat receptor protein kinase MSP1 797 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1061 Lele-ChrLele42 23070256 23073612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1061 34 738 Miscellaneous Gene Families AT1G17250 51.883 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lele42g1061 Pkinase 5.8e-39 CL0016