Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1054 ATGGGTGACAAATTGAGTGGATCTACCGCAGTTGAAATGACGGGAAAAATCATGGTGCTAGCTATAATAATCCTCTTCATGGTGGTTGTGTTTGTTCTGTTTCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGAAGAAACCACTCCTCCGCCGCCTCGCCGTCGACGCCGACGCCGCTTTGTCTTCGCCCCTGGGCAAGATCCGGCTATTTACGGCGGTCAGAGAAGTGGACTCGATCCTTCACTGCTTTTGTCCTTACCAGTAATAATTTACCAACCTGAAAATTTCAAAGATGGTCTGGAATGTGCTGTTTGTCTCTCTGAGCTTGTTCAAGGAGAAAAAGCGAGGCTTTTACCCAAATGCAATCATGGATTTCATGTGGATTGCATAGATATGTGGTTTCAATCACATTCCACTTGTCCTCTTTGTAGAAACCCAGTTGCTTCTGAACCCCCTAAATGCAATAGCAGTTCAAGTGTTCGAGAAAATTCCTCAGAGAATATTGGTAGCCAATCACAAGCATCAGAAAATTTTCAAAACTCAGCTTTAGCTACTACGAGTGGTTCGGAGTCTCCAAATTTTCCAACTAATGTGTTGGTTTGGGGGAATGAAACTCAAGTTAGTTCTATTAATACATCTTTGGAAGAAGAGGGTCCTTCTTCTTCTACTACAGCTAGCAGTAGTTGCAGTAACAATAGACGCATTGAAATGATGGTGATTGATATACCAAGTGAGGTGAATTCTTCATCTTTATCTCCTTCTGCAAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATGACCACAAGACTGAGGTCACTGAAGAGGCTTTTAAGCAGAGACAAAAGGCTAGGTCCTTGTAATCCTGGTCCTGGCTCTATAGATGTGGAACAAGCAGGGAGAGGACAGAGCTAG 921 0.4376 MGDKLSGSTAVEMTGKIMVLAIIILFMVVVFVLFLHLYAKWFWWSIEETTPPPPRRRRRRRFVFAPGQDPAIYGGQRSGLDPSLLLSLPVIIYQPENFKDGLECAVCLSELVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASEPPKCNSSSSVRENSSENIGSQSQASENFQNSALATTSGSESPNFPTNVLVWGNETQVSSINTSLEEEGPSSSTTASSSCSNNRRIEMMVIDIPSEVNSSSLSPSASRFAEDELKSPMTTRLRSLKRLLSRDKRLGPCNPGPGSIDVEQAGRGQS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1054 306 SMART ring_2 104 145 IPR001841 -
Lele42g1054 306 MobiDBLite consensus disorder prediction 213 234 - -
Lele42g1054 306 MobiDBLite consensus disorder prediction 265 284 - -
Lele42g1054 306 Pfam Ring finger domain 103 146 IPR001841 -
Lele42g1054 306 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lele42g1054 306 MobiDBLite consensus disorder prediction 151 179 - -
Lele42g1054 306 MobiDBLite consensus disorder prediction 246 306 - -
Lele42g1054 306 MobiDBLite consensus disorder prediction 152 179 - -
Lele42g1054 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 153 IPR013083 -
Lele42g1054 306 SUPERFAMILY RING/U-box 87 152 - -
Lele42g1054 306 CDD RING-H2_EL5_like 103 146 - -
Lele42g1054 306 FunFam RING-H2 finger protein ATL3 73 151 - -
Lele42g1054 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1054 Lele-ChrLele42 23014419 23015339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1054 2 284 C3H Transcription Factor Family AT1G53820 43.564 3.33e-72 223