Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1044 ATGTCCTCAGGTATCGTGTCCAGGACAATGAGATACGATGATGAGGATGAGATTAACGTTATTAATAATGTCGAAGAGTCATTCAGAGAGGAGAAGGTGAAGTTAGAGACTGATGAATCTTCTGGAAGCTCCAGCATCCATAACATCATGAGCTTCTGTCAGATTTGCATGGAAGACAAACCAATGGAAAAGATGTTCAGGGACAACAAAAGCTGCGAACATGTTTTCTGTTCAGACTGCATGGCATCCTACGTGGCGTCGAAGCTTCAAGAGAACATATCAACAGTGAAATGCCCTGACCCAAAATGCAGAGGCATCATAGAGCCTCTCTTTTGTCGATCCATAATCGCAGAGGAGTTATTTGAAAGATGGGAAAATGCAGTGTGCGAGAACCTGATTCTTGGGTCCCAGAAATTTTACTGTCCATTTAAGGATTGCTCGGCCATGTTGGTGGACGACGGCGACGAGGTGGTGACATCCTCGGAGTGTCCAAACTGCAGGAGGCTCTTCTGTGCTCAGTGCAAGGTGGCGTGGCACGCTGGTATGGATTGCGCGGAGTTTCAGAGCCAGAAAACGGATCAGACACAGAACGATGATCTGCTGAAGGAACTCGCCAAGAACAAGAGATGGAGGAGGTGCCCTTGTTGTAGATTTTTCGTGGAAAAGATTGATGGATGCTCTCAAATTTCCTGCAGGTGTGGGAATCAGTTTTGTTATGGATGCGGATCTGATTGGAATCAGCATCATGGAGATTTTGAAGGAACCAGGAGCCCACTTAGTCAAGCCCAGATCAGAACTGGAAATTCTTGA 810 0.463 MSSGIVSRTMRYDDEDEINVINNVEESFREEKVKLETDESSGSSSIHNIMSFCQICMEDKPMEKMFRDNKSCEHVFCSDCMASYVASKLQENISTVKCPDPKCRGIIEPLFCRSIIAEELFERWENAVCENLILGSQKFYCPFKDCSAMLVDDGDEVVTSSECPNCRRLFCAQCKVAWHAGMDCAEFQSQKTDQTQNDDLLKELAKNKRWRRCPCCRFFVEKIDGCSQISCRCGNQFCYGCGSDWNQHHGDFEGTRSPLSQAQIRTGNS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1044 269 FunFam RBR-type E3 ubiquitin transferase 48 135 - -
Lele42g1044 269 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Lele42g1044 269 Pfam IBR domain, a half RING-finger domain 123 184 IPR002867 -
Lele42g1044 269 Pfam IBR domain, a half RING-finger domain 201 248 IPR002867 -
Lele42g1044 269 ProSiteProfiles Zinc finger RING-type profile. 53 102 IPR001841 -
Lele42g1044 269 SUPERFAMILY RING/U-box 52 131 - -
Lele42g1044 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 133 IPR013083 -
Lele42g1044 269 ProSiteProfiles TRIAD supradomain profile. 49 258 IPR044066 -
Lele42g1044 269 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 36 247 IPR031127 GO:0004842|GO:0016567
Lele42g1044 269 Gene3D - 181 265 - -
Lele42g1044 269 SMART ibrneu5 122 184 IPR002867 -
Lele42g1044 269 SMART ibrneu5 193 250 IPR002867 -
Lele42g1044 269 SUPERFAMILY RING/U-box 132 189 - -
Lele42g1044 269 SUPERFAMILY RING/U-box 194 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1044 Lele-ChrLele42 22943996 22945307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1044 70 243 C3H Transcription Factor Family AT2G19610 28.649 2.56e-18 82.0