Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1042 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCTGCGGCGGCTGCAGCCGGGACAGGGAGGAGGTCTCGTCGACTCACCGCCGATTATCTGTGGCCTGATTTGAACAAGCTTGGAGCGGGTAGGAGGTTTTCCAAGGCACTGAAGCCCGAAACTGTCATCGACTTGGACGATGATTTTGAAGCTGATTTCAGGGAATTCAAGGACGATTCCGATATTGATGTAGATGAAGATGATGATGATTTGATGATTGATGTCAAACCCTTTTCTTCATCCGCCACTAAGCCCTCTAAAAGGCCCCTGTCTCGTGGATCTGCTACTGCAAAACCTGAGAAATCCGATGTGCAAGCTGAGAAGTCTTTGAAAAGGAGGAGGAAGAATCAATACAGGGGAATCCGCCAGCGCCCATGGGGCAAATGGGCGGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACCGCTGAAGAAGCTGCAAGAGCCTATGATGCTGAGGCAAGAAGGATCCGCGGCAAGAAAGCCAAGGTCAACTTCCCTGCTGAGGTTTCAGGCACTTCGTCAAAGCGTATCAAGACCAGCAAAGTCGAGAAGCCGCTTCCAAAGGCCAATCTGAACTCTGCCCAGCCCAATCTGACCCAAAACTTCAATGCTGGAACCAATCTGGAGGACTATTACTACTCTATGGGTCTGATGGAACAGAAACCACAGATTAACAGCCAGTTTGCTGCCCCTGCTGCTAACATGGGATCATTCCCTGAGACCAACAATGTGGTCCCATCACTTTCATCATCTGATGATGTCACTGTTTATTTCAGTTCCGATCAGGCCAGCAACTCATTTGACTACTCTGATTTCGGATTTGGCGAGCACGCCCCAAAGACCCCGGAAATCTCATCCATGCTTTCTGGTGAATCTCAGCATCTGCAAGATTCCAATCAGAACAACAACTATAACAACTATATTCAGAATGTGGTACCAGCTGAAAATGGTTCTGGAAAGACTCTGTCGGATGAGCTCGCTGACATCGAATCTGAGCTGAAGTTCTTTCAGACACCTTATCTTGATGGAAGCTGGGATGATGCTTCACTGGGAAGCCTGCTGAGTGCAGAGACAACACAGGATGCTGCAAACCCAATGAGCCTGTGGAGCTTTGATGATCTTCCTCCATCCATGATGGGGGGACTACAAGAATCTGTGGTTGGAGATGGTTTGAGAAAGAAAGTAAAAGGGCTTAAGCTTAAGCATGTGTGGAGGTTATTCAGTGGTAGCTAA 1293 0.4872 MCGGAIISDFIPAAAAAAGTGRRSRRLTADYLWPDLNKLGAGRRFSKALKPETVIDLDDDFEADFREFKDDSDIDVDEDDDDLMIDVKPFSSSATKPSKRPLSRGSATAKPEKSDVQAEKSLKRRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPAEVSGTSSKRIKTSKVEKPLPKANLNSAQPNLTQNFNAGTNLEDYYYSMGLMEQKPQINSQFAAPAANMGSFPETNNVVPSLSSSDDVTVYFSSDQASNSFDYSDFGFGEHAPKTPEISSMLSGESQHLQDSNQNNNYNNYIQNVVPAENGSGKTLSDELADIESELKFFQTPYLDGSWDDASLGSLLSAETTQDAANPMSLWSFDDLPPSMMGGLQESVVGDGLRKKVKGLKLKHVWRLFSGS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1042 430 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Lele42g1042 430 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Lele42g1042 430 MobiDBLite consensus disorder prediction 89 130 - -
Lele42g1042 430 SUPERFAMILY DNA-binding domain 129 188 IPR016177 GO:0003677
Lele42g1042 430 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Lele42g1042 430 Gene3D AP2/ERF domain 128 188 IPR036955 GO:0003700|GO:0006355
Lele42g1042 430 CDD AP2 129 187 IPR001471 GO:0003700|GO:0006355
Lele42g1042 430 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Lele42g1042 430 FunFam Ethylene-responsive transcription factor 2 128 188 - -
Lele42g1042 430 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Lele42g1042 430 PANTHER DNA-BINDING DOMAIN 99 299 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1042 Lele-ChrLele42 22914780 22917301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1042 1 394 AP2-EREBP Transcription Factor Family AT3G14230 48.317 2.03e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele42g1042 AP2 2.3e-12 CL0081