Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1027 ATGTATGGGGGATCCCCAAATTCACGTCGCTACTACCCATCTCCTGCAAACTCTCGCAATGTCTCTTTCTCCTTCATAGCCTCTACCTCTCACACCGACGTAAGAGCTCCTCCTGCGTCACCCTTTTATTCAGACCATGCACATTCTTGGAAAGAAGAAATTTCATGGCAGATTGAGCCCAATGAGCGACTCAACTACCCTAAAACCCTAGGCTCCGCCCTGAGCCCGTGGACACCTTCTGATCTCAGCCAGACATTTCGTCGAACAGCTAACGACCATCACCTCCCTCGAACATACCAAAATGGGAAAATCGAGCTCCAGAGTTACGCTGCTGAAAGTGAGATTGAAATTGGGAATAGAAGTGCATTAGGAGAAGAAGACGAGGCGAGTATGATGTGGTATAACAGTGAAGTGGATCTTGGAAGTTATTGCAGCGAGAGTGATTGTGATGAGAAGGAGAAGAAGAAGGATTCAAGAAGAAGAGCAAGAGTGGGGGTGATGGGGTCGTTTAGGTACTCAACGAAGTGGGATTTGGTGTTAGTGATGGTGGGGGCAATCATCAATGGCGGATCACTGCCTTGCTATTCGTATCTTTTTGGTGTGTTGGTCACTAAGATTGCTTCTGAAGCATTCGCTGGTCACCAAACACTGATCCTTAAGGACGTTCAACAGATGAGCACTGGTGATGTCATGCACGCAGTTGCAAGTGATGTTGCTCAGATTCAAGAAGTCATGAGAGACAAGATGTCTCACTTCATTCATCACGTATTTACATTCATTTGTGGCTACACAGTTGGATTTCTAAGGTCATGGAAGGTCTCTCTGGTGGTTTTCTCAGTCCCCCCTCTTACTCTTTTCTGTGGCATAGCCTACAAAGCTGTTTATGGAGGTCTTACAGCAACAGAGGAAGCTTCATATAGGAAAGCAGGAAGCGTAGCAGAGCGTGCCATAAGATCAATAAGGACAGTGTTTGCTTTTGTTTCAGAAAGCCAAATGGTTTCAAAATACAGAGTAGTATTGCAAAAATCAGAGTATTTTGGGGCAAAGATAGGGTTTGCAAAAGGTGGAGGCACGGAATTAATCTATTTAATAACCTACTCAACATGGGCATTGGCTTTCTGGTATGGTTCCCTCTTAATTGCCAGAAATGAGAGTGATGGTGGTTCAGCCATTTCTTGTTTCTTTGGTGTTAATATTGGAGGAAGAATGACACTAGTTTCTGAAATTGGCAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCGCAAGGTACCGTTGCAGCAAGTCGTGTATTTGAAATGACAGAGAGAATTCCTAAGATTGATCCCTACAGCTCAGAAAGAAACAAGCTTGAAAATGTTAATGGAACAATTGAGTTCAAGAATAATGTCAGCTTTAAATACATCATTCTTCAGTCCACTCTAAAGGATGACATTTATGGCAGGATAGCAACAGTAAGGAATGCTCACACCATTGTAGTTCTTGAATGTGGTTCTGTGACTGAGATTGGTGACCATCACCAGCTTATGAGAAAAGCTGGCACATATTATAACCTCATCAAGCTTGCTTCTGAAGAACCTGATCCCATCTCAAAACCTAGGCTGCTTGAAGAGTATGTCACAAAAAAGGCTAATGACTTTTCCGTCTATGAGAAATCATCTCCTGATATCTCGAAGTTCACCTCTAAGTACTTAATATCCATGGATGAAGAAGAACTAGAAGATATAGATCATACACAAAAGAAAAGGCCAAGAAAATTCAGACTCTTTGAGATATGGAAACTGCAAAAGCCATAA 1803 0.4276 MYGGSPNSRRYYPSPANSRNVSFSFIASTSHTDVRAPPASPFYSDHAHSWKEEISWQIEPNERLNYPKTLGSALSPWTPSDLSQTFRRTANDHHLPRTYQNGKIELQSYAAESEIEIGNRSALGEEDEASMMWYNSEVDLGSYCSESDCDEKEKKKDSRRRARVGVMGSFRYSTKWDLVLVMVGAIINGGSLPCYSYLFGVLVTKIASEAFAGHQTLILKDVQQMSTGDVMHAVASDVAQIQEVMRDKMSHFIHHVFTFICGYTVGFLRSWKVSLVVFSVPPLTLFCGIAYKAVYGGLTATEEASYRKAGSVAERAIRSIRTVFAFVSESQMVSKYRVVLQKSEYFGAKIGFAKGGGTELIYLITYSTWALAFWYGSLLIARNESDGGSAISCFFGVNIGGRMTLVSEIGRGLALALSYFAQFAQGTVAASRVFEMTERIPKIDPYSSERNKLENVNGTIEFKNNVSFKYIILQSTLKDDIYGRIATVRNAHTIVVLECGSVTEIGDHHQLMRKAGTYYNLIKLASEEPDPISKPRLLEEYVTKKANDFSVYEKSSPDISKFTSKYLISMDEEELEDIDHTQKKRPRKFRLFEIWKLQKP 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1027 600 Gene3D - 484 553 IPR027417 -
Lele42g1027 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 523 IPR027417 -
Lele42g1027 600 PANTHER ABC TRANSPORTER B FAMILY 484 524 - -
Lele42g1027 600 Pfam ABC transporter transmembrane region 180 399 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele42g1027 600 CDD ABC_6TM_Pgp_ABCB1_D1_like 178 433 - -
Lele42g1027 600 Gene3D ABC transporter type 1, transmembrane domain 554 600 IPR036640 GO:0005524|GO:0016020
Lele42g1027 600 Gene3D ABC transporter type 1, transmembrane domain 219 478 IPR036640 GO:0005524|GO:0016020
Lele42g1027 600 SUPERFAMILY ABC transporter transmembrane region 168 444 IPR036640 GO:0005524|GO:0016020
Lele42g1027 600 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 178 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1027 Lele-ChrLele42 22797782 22804966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1027 220 470 Calmodulin-binding Proteins AT2G36910 33.463 6.02e-35 139