Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1020 ATGAGATTTATTATTTCAGATGTTCACCAGCATGCTGATGTCTGCGTTTGCGACTGCTTCACTGTTCTTTTTCTTCTTATGATTGTTGTTGATTCATTTCGAGATTTCAAGCATTTAGGCCTAATATGTGATTTCTCTGGTTTTCGGAGGCCTCAACCTCATATCTTTCATTTCATTAGTTTCTCGAGAGTCAGACTCGGGACCCCTCAAACCCTAGTAGTCCCTAACCGACCTCGACCGCAAAACATCCCCCAGAAAAAAATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTCTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCGAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTTACTGAACCACTTCTGCAAGAAGTTTTTGCAAGTACTGGTCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACGTCAGGTCATTTCAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAAACTGGGCGTTCTAGAGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGTAAGTGGATTGGTAGTAGACAAATACGTTGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAACTCTGACTCAAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGAGGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACCACTGTCTATGTGGGCAATCTTGCTCCAGAGGCTACCCAGCTTGATCTCCATCACCACTTCCATGCTCTTGGGGTCGGAGTGATAGAGGAGGTTCGGGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCCCAGTCTATCCTTTGCGGAAAACCAATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCACCGGGAACTGCTTCAAATCCTCTACCCCCACCTGCAGCGGCACCTCTGCCGGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTAGCGATGAGCAAGATGGGTGGTGTACATGCCCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCTGCAATTGGAGGAAGCCAGGCTATATATGATGGTGGCTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1515 0.4581 MRFIISDVHQHADVCVCDCFTVLFLLMIVVDSFRDFKHLGLICDFSGFRRPQPHIFHFISFSRVRLGTPQTLVVPNRPRPQNIPQKKMQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWIGSRQIRCNWATKGAGSNEDKQNSDSKSVVELTNGSSEEGKETTNSDAPENNPQYTTVYVGNLAPEATQLDLHHHFHALGVGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1020 504 SMART rrm1_1 141 210 IPR000504 GO:0003723
Lele42g1020 504 SMART rrm1_1 347 417 IPR000504 GO:0003723
Lele42g1020 504 SMART rrm1_1 226 299 IPR000504 GO:0003723
Lele42g1020 504 Gene3D - 80 223 IPR012677 -
Lele42g1020 504 CDD RRM1_TIA1_like 142 212 - -
Lele42g1020 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 303 IPR000504 GO:0003723
Lele42g1020 504 FunFam oligouridylate-binding protein 1B-like isoform X2 88 222 - -
Lele42g1020 504 Gene3D - 326 425 IPR012677 -
Lele42g1020 504 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 129 424 - -
Lele42g1020 504 CDD RRM3_TIA1_like 346 421 - -
Lele42g1020 504 FunFam Oligouridylate-binding protein 1C 323 425 - -
Lele42g1020 504 FunFam oligouridylate-binding protein 1-like isoform X2 223 318 - -
Lele42g1020 504 SUPERFAMILY RNA-binding domain, RBD 219 308 IPR035979 GO:0003676
Lele42g1020 504 CDD RRM2_PUB1 226 300 - -
Lele42g1020 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 214 IPR000504 GO:0003723
Lele42g1020 504 SUPERFAMILY RNA-binding domain, RBD 337 428 IPR035979 GO:0003676
Lele42g1020 504 SUPERFAMILY RNA-binding domain, RBD 124 218 IPR035979 GO:0003676
Lele42g1020 504 Gene3D - 224 325 IPR012677 -
Lele42g1020 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 208 IPR000504 GO:0003723
Lele42g1020 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 411 IPR000504 GO:0003723
Lele42g1020 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 297 IPR000504 GO:0003723
Lele42g1020 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 421 IPR000504 GO:0003723
Lele42g1020 504 MobiDBLite consensus disorder prediction 303 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1020 Lele-ChrLele42 22757667 22765898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1020 135 421 Eukaryotic Initiation Factors Gene Family AT1G49760 29.412 1.26e-24 105