Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1006 ATGCCTTGCAGAAGAATTCTCTTGAAAAGCTTCGTTCTTGCCTGTTTCAAGCCCAATCATCAATCTTCTTCTTCATCGTGCTCTGCAAATAATCATCATAATCGCCATAAGAAAAATAAATGCTCGGCCTCCGGCAAGGTGAGCTCAAGAAGAGTGTGTCTCTCTGATTTGAGCAATTCTTCTTCTCTGTCTATCATGAGCGATCTCTCAAACTCTGTTCTGGGTTCAAATCTTCATATCTTCACCCTCAAGGAGCTGAAAGAGATCACAAACAATTTCTGCAAATTCAGTGTTGTTGGTGAAGGTGGATTTGGTAAGGTTTATAAGGGCTTCATTGATGATAAACTCAGGCCTGGTTTAGAAGCTCAACGAGTGGCAGTTAAAGTTCTGGACTCAGATAGCAAACAGGGACACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAATTGAAGCATCCCCATCTGGTGAACTTGATTGGATATTGCTGTGAAGATGAACACAGGCTTCTGGTTTACGAATACATGGAGAGAGGAAATCTAGAGAACAAGCTTTTCAAGGGTTACTTAGCAGCGTTGCCTTGGCTCACAAGAATCAAGATCGTCATTGGCGCCGCGAAAGGACTCGCTTTCCTTCACGAAGAAGACCAACCCGTCATCTACAGAGATGTCAAAGCCTCAAACATCCTATTAGACGCCGATTACAATGCCAAGCTCTCTGACTTCGGTCTCGCCATAGACGGACCAGAAGAAGAAGATCAAATTCATATCACAACTCGAGTTATGGGTACTCATGGTTATGCTGCTCCTGAGTACATAACATCTGGGCATTTGACAACCATGAGCGATGTTTATAGCTTTGGAGTGGTTCTGTTAGAGCTGATTACAGGGAAGAGATCAGTGGATAAGAACCGACCGATCAGAGAGAAGAATTTAGTAGAATGGGCAAGAACATTGTTAAAGGACCCTAGTAAGCTTGAAAGAATAATGGACCCAAGACTTGAGTGCCAATATTCTTATGAAGGAGCTAGAAAAATGGCGTCTCTGGCTCACCAATGTCTGAGCCAAAACCCTAAGTCTCGACCCTCCATGCGAGCCGTGGTTAAGACCTTAGAGCCACTCATGAACCTAACTGATATACCGGTCGGCTGCTTTGTCTATGTGGTCCCCAGTGAAAATAAACCAGTTCAATGTGAGCAGACGGAGGAGGAGGAGGAGATAAGGGAGCAGACGAAGAAGACGACGAAGAAGAATCGAAAAGGTCAAAGTCGAAGACGTCAGATTAAGATGCTGAGATCATCTGGTTCTGTTCATTCAGACACTGCCCTGTACAAAGTTCTTGGTACAAGCCTGTATTCTCCAAAGCAATAA 1371 0.442 MPCRRILLKSFVLACFKPNHQSSSSSCSANNHHNRHKKNKCSASGKVSSRRVCLSDLSNSSSLSIMSDLSNSVLGSNLHIFTLKELKEITNNFCKFSVVGEGGFGKVYKGFIDDKLRPGLEAQRVAVKVLDSDSKQGHREWLAEVIFLGQLKHPHLVNLIGYCCEDEHRLLVYEYMERGNLENKLFKGYLAALPWLTRIKIVIGAAKGLAFLHEEDQPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEEEDQIHITTRVMGTHGYAAPEYITSGHLTTMSDVYSFGVVLLELITGKRSVDKNRPIREKNLVEWARTLLKDPSKLERIMDPRLECQYSYEGARKMASLAHQCLSQNPKSRPSMRAVVKTLEPLMNLTDIPVGCFVYVVPSENKPVQCEQTEEEEEIREQTKKTTKKNRKGQSRRRQIKMLRSSGSVHSDTALYKVLGTSLYSPKQ 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1006 456 FunFam Serine/threonine-protein kinase BIK1 60 175 - -
Lele42g1006 456 ProSitePatterns Protein kinases ATP-binding region signature. 99 128 IPR017441 GO:0005524
Lele42g1006 456 ProSiteProfiles Protein kinase domain profile. 93 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1006 456 SMART serkin_6 93 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1006 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Lele42g1006 456 CDD STKc_IRAK 99 374 - -
Lele42g1006 456 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 176 380 - -
Lele42g1006 456 MobiDBLite consensus disorder prediction 20 43 - -
Lele42g1006 456 PANTHER OS01G0588500 PROTEIN-RELATED 38 374 - -
Lele42g1006 456 MobiDBLite consensus disorder prediction 405 437 - -
Lele42g1006 456 Gene3D Transferase(Phosphotransferase) domain 1 176 380 - -
Lele42g1006 456 SUPERFAMILY Protein kinase-like (PK-like) 68 372 IPR011009 -
Lele42g1006 456 Pfam Protein tyrosine and serine/threonine kinase 98 371 IPR001245 GO:0004672|GO:0006468
Lele42g1006 456 Gene3D Phosphorylase Kinase; domain 1 55 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1006 Lele-ChrLele42 22617475 22619229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1006 79 413 Glycoside Hydrolase AT3G07070 46.608 6.07e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele42g1006 PK_Tyr_Ser-Thr 1.5e-48 CL0016