Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0998 ATGTCCTCTCACGAACAAGCCCTAGTGTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGCGCCATTTTGGGTGTCGCATTGGCCTATGCCGCTGTCCGGTCCGTCGTCAAACTTACTGCTAACTCTACCGCGCTCGACAAGCTCAGCGTCGCCCCTACCCTCTCCGTTTCTGACCTTCGGTCACTTCTGGACAGTTCTGACGCTGACCTCAATTCACAAGATTGCAACAAATTCGTTATTGTCCGTGGCACTGTCGAGGCCAAGTCTGCCGTTGAGAGCAGCTGGAAAAGCTTAAGACCTAGTGTATTAGTTTCTCGCGAGTCTGGCGATAACGCCGTGGCTATTCAGAGAACTCAAACGTGTGTATATACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATCTTCGAGCCTTATTTGCTCGAAATTGGAGGCAGCAAGGGTCTACATCTTTAAGAACGGTGCCCTTTGTTCTCATTGATGGTGGACGTCGACCTCATGCTGATTATGTTGTTGTCAGCTTGGAAGGCTCAAGACATCCCTTACCTCTTACTACAGTTTATCATAAATTGCAACCCATAAATGCTTCTCCATACACATTCCTGCAGGCACTTTTCGGACATGAGTATCCAGTTGGGCTTCTGGATGAAGAGAAAATTCTTCCTTTGGGAAAGGATATTAATGCTGTTGGCATATGCTATTTTAGAAATGGAATTGCTGAAATTAAGTCATGCAAAGAGTTGCCATATTTTCTGTCTGAATTGAACAAAGATCAGATGGTTGTGGATCTTACATTTAAAACAAAGGTACTTTTTTGGAGTGGTATCATTCTGGGTTCACTGTCAGTTGGCATTCTTGGTTATGCTTTTGTGAGGAACTGGAACAAGTGGAAACAATGGAGGCAACAGAGGCAGGCTCAACATCAAGGGCAAGCCAACTATGATAATGCTGCTGAATTCGAGATTTTAGACGATGGGATAGAAGATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTCGTTCCCTGTGGGCATCTTGTGTGTTGCCATGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAGTGTCCTGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTCGAATCGTATAGTAAACGGCACCATTAG 1188 0.4571 MSSHEQALVSLFSQLALSFDGAILGVALAYAAVRSVVKLTANSTALDKLSVAPTLSVSDLRSLLDSSDADLNSQDCNKFVIVRGTVEAKSAVESSWKSLRPSVLVSRESGDNAVAIQRTQTCVYTEWKGFFGWTSDLRALFARNWRQQGSTSLRTVPFVLIDGGRRPHADYVVVSLEGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDINAVGICYFRNGIAEIKSCKELPYFLSELNKDQMVVDLTFKTKVLFWSGIILGSLSVGILGYAFVRNWNKWKQWRQQRQAQHQGQANYDNAAEFEILDDGIEDVPDGQLCVICLMRRRRSVFVPCGHLVCCHGCAISVEREVAPKCPVCRQEIRNSVRIFESYSKRHH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0998 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 389 IPR013083 -
Lele42g0998 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 389 IPR044247 GO:0004842
Lele42g0998 395 ProSiteProfiles Zinc finger RING-type profile. 337 377 IPR001841 -
Lele42g0998 395 SUPERFAMILY RING/U-box 336 383 - -
Lele42g0998 395 SMART ring_2 337 376 IPR001841 -
Lele42g0998 395 Pfam Zinc finger, C3HC4 type (RING finger) 335 382 - -
Lele42g0998 395 Pfam E3 Ubiquitin ligase 140 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0998 Lele-ChrLele42 22570270 22574028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0998 327 395 C3H Transcription Factor Family AT3G06140 34.783 2.08e-07 50.4