Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0989 ATGGGATTGCCTGATTATGCTTCAATCCTGATCGTAGCAGCATTAATAGCTGCACTTTTATTCTTCAGCCTTACCATGCTTGGTTGGTGCACCTACAGAAGTATTGATCTGATACAATCCATTCCACCCATAACAACAACAACAAACTCAGCTCTTGATGACAAGTTCCAATCCTTCACCACAAGCCTAGAGTCTCATTCCAAGACATTTCAGTTCAGAGCTGCAGAAGCTGTACCTGGCACTGATCAGACTGAATGCATCATCTGTTTGGCACCCTTTGAAGAAGAAGACAGTGTCAGGCAGCTTCATAGCTGTAAACACATCTTTCATACGATTTGCATCGATACTTGGCTCGCCTCTCATTCTGGCTGCCCTTTGTGCAGAACCCAGATAGACCTTTGTGCCACCTTCTCCGAATGA 420 0.4476 MGLPDYASILIVAALIAALLFFSLTMLGWCTYRSIDLIQSIPPITTTTNSALDDKFQSFTTSLESHSKTFQFRAAEAVPGTDQTECIICLAPFEEEDSVRQLHSCKHIFHTICIDTWLASHSGCPLCRTQIDLCATFSE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0989 139 SMART ring_2 86 127 IPR001841 -
Lele42g0989 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 133 IPR013083 -
Lele42g0989 139 Pfam Ring finger domain 85 128 IPR001841 -
Lele42g0989 139 SUPERFAMILY RING/U-box 39 133 - -
Lele42g0989 139 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Lele42g0989 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0989 Lele-ChrLele42 22516838 22517257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0989 68 131 C3H Transcription Factor Family AT4G33565 50.000 2.64e-16 72.0