Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0984 ATGAATTTGCAACAAGTTGAACAGTCTAGATCCTCTAATGGATATGGCCGTCGAAAATCTGAAAGAGAAGGGGCAGCCAAGCCAGAGAATAAGATCTCATCTGGGAAGTCAAATGCCAACAGACTGGCAAGTACAGGTTTGGGGACTGGCAATATAGGTGATGGTCCTTCACATGATCGACTAGTATATGTTGCAACATGTCTTATTGGGCAGCAGGTGGAAGTGCATGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATATTGAGAAAGATTTTGGAATCATTTTAAAGATGGCTCGCTTGACGAAGGAGGGTTCATTGCGAGGGCAGAAGTCTGGTATAGAATCAGTCAGCAAGGCTCCTTCAAAGACTATAATTATACCTGGCAAAGAATTTGTACAAGTCATAGCAAAGGGCGTTGCTGTTACTAGGGATGGCTTGCCTAGTGAAGCTCACCATGAAATGTATCAGGACATCATTGTTGATTCAGTAATATCACAATCACGTCATGTTGACTTAGAGAGAGAACTACAACCATGGGTGCCTGATGAAGATGATCCGCAGTGCCCTGAACTAGAAAATGTCTTTGATGAAACTTGGAAAAGGGGCTGGGATCAGTTTGAAACAAACAAAACGTTGTTTGGTGTAAAAAGCACGTTTAATGAGGAACTTTATACCACCAAGCTCGAGAAAGGCCCTCGGACAAGAGAGCTGGAGAAGCAAGCTTTAAGAATAGCAAGAGAAATCGAGGGTGAGGATACCCAAGATCTTCATCTGGCCGAGGAAAGAGGCCTTTATCTACATAAGAATTTTGATATTGATGAAGAGACTAGATTCTCTTCAGTCTATAGGGATAAAGTCGTTGATGACAGTGGCTATGATGAGAATGAGGATATTCTGTTGGATTCATGCAATTCTGAAACATTTGGAGATACATTCGCTTCAGTTGTTATGGGATCTGGTGAATCAAGTGATGGGAAAGATGATGATGGAGTTAGAACATCATCAAATTCATCCTCTAAGGATTTACCACAATCATCTCAGTCAAGTAATTGTGTGGATTTAGGCCGTGCTGGCTCTCACAATCTTGCTAATCAGTTAGCATCTGAACTCCCTGCAAAAAGTGACCCTACTTCGGATGCTGAATGCAGGGTTCAGGGGAACTCACTTAGTGATCTGCATGGAGCCATTGACAGTAGCAAGGAAGAAAATCAGATAGAATCTGGGGATGTTCAACCGTCAAAATCCAAGGACTTACATTCATCACACAACTTGAAGAAAGATGACCCCGATACTGGGGCATTGTCTTCAAATGCCACCTCTGATGCCCCTTCATCTAATATTTCATTAAAGGCTCCTGGACAGACTGGTTTGCCTGTTGATTTGATTGAGGGTTCAACATCTGAGAAAGATCTTATGAAAGGTGTTGCAGCATCTTCTGGTCCTGGTCTATCACCAAGTTCTTCAGTTGGTTCATTATCTTCTGAAAAATCAACACTGAATCCAAACGCAAAGGAATTCAAGCTCAATCCAAATGCAAAGAGTTTCGTTCCATCCCAATCACCAGTTAGGCCTCCCTCACAGGTGTCGGATGGCTCCTTCTATTACCCATCTAATGTAACTACTGTACCGCGTATGACTTCCATGCCCATGGAACTTGGAATGGGACATGCATTTGGTGGGCCGCAACCTGTCCTGTATAATCCACAAGTAGCACAAATGACATCACAAGCATATTTCCATCCAAATGGACCACAGTACGGACAGATTCTTGGGCATCCCAGGCAAGTTTTGTACATGCCAGGTTATTTACCTGAAACACCATACAAGGGACGGCAATACTAA 1857 0.426 MNLQQVEQSRSSNGYGRRKSEREGAAKPENKISSGKSNANRLASTGLGTGNIGDGPSHDRLVYVATCLIGQQVEVHVKNGSIYSGIFHATNIEKDFGIILKMARLTKEGSLRGQKSGIESVSKAPSKTIIIPGKEFVQVIAKGVAVTRDGLPSEAHHEMYQDIIVDSVISQSRHVDLERELQPWVPDEDDPQCPELENVFDETWKRGWDQFETNKTLFGVKSTFNEELYTTKLEKGPRTRELEKQALRIAREIEGEDTQDLHLAEERGLYLHKNFDIDEETRFSSVYRDKVVDDSGYDENEDILLDSCNSETFGDTFASVVMGSGESSDGKDDDGVRTSSNSSSKDLPQSSQSSNCVDLGRAGSHNLANQLASELPAKSDPTSDAECRVQGNSLSDLHGAIDSSKEENQIESGDVQPSKSKDLHSSHNLKKDDPDTGALSSNATSDAPSSNISLKAPGQTGLPVDLIEGSTSEKDLMKGVAASSGPGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFVPSQSPVRPPSQVSDGSFYYPSNVTTVPRMTSMPMELGMGHAFGGPQPVLYNPQVAQMTSQAYFHPNGPQYGQILGHPRQVLYMPGYLPETPYKGRQY 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0984 618 MobiDBLite consensus disorder prediction 395 466 - -
Lele42g0984 618 MobiDBLite consensus disorder prediction 1 40 - -
Lele42g0984 618 MobiDBLite consensus disorder prediction 14 29 - -
Lele42g0984 618 MobiDBLite consensus disorder prediction 479 535 - -
Lele42g0984 618 PANTHER ATAXIN 2-RELATED 34 611 IPR045117 GO:0003723
Lele42g0984 618 MobiDBLite consensus disorder prediction 435 457 - -
Lele42g0984 618 SMART LsmAD_2 218 289 IPR009604 -
Lele42g0984 618 Gene3D - 66 139 - -
Lele42g0984 618 MobiDBLite consensus disorder prediction 485 535 - -
Lele42g0984 618 MobiDBLite consensus disorder prediction 320 361 - -
Lele42g0984 618 Pfam Ataxin 2 SM domain 58 142 IPR025852 -
Lele42g0984 618 MobiDBLite consensus disorder prediction 417 434 - -
Lele42g0984 618 MobiDBLite consensus disorder prediction 340 361 - -
Lele42g0984 618 Pfam Ataxin-2 C-terminal region 500 511 IPR009818 -
Lele42g0984 618 Pfam LsmAD domain 218 288 IPR009604 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0984 Lele-ChrLele42 22462632 22468743 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0984 42 22462632 22468743 Lele38g0265 38 2135997 2136728 CCT
Lele42g0984 42 22462632 22468743 Lele40g0252 40 2004828 2007379 CCT
Lele42g0984 42 22462632 22468743 Lele43g0380 43 3411492 3417267 hybridization
Lele42g0984 42 22462632 22468743 Lele44g0381 44 2789809 2795894 hybridization