Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0983 ATGGGAGTTCTGCCACAACAACGTCATAGTACCAAGACATTGAGTTTCCAGTTTCAAGATCAGGATTCATCTTCTACTCAATCGACTGATCAATCTTATCCGGAAGTTGGTTCAGCTCAATCAGGTCAAATTTCTATCCCATGTAGCAATTCTTCTGCACATTCAAAATGTAGTGCAAGTGGAGGGGGTCTCATCAGCTCATCATTGGGGAGTCAGAGTCTTTGTTTTCCTCCATTCCCAGTGCATCATAACCAATCAATTGCTCATATTGCATTTCGCCATGCTGAACCATGCTTTGATGGTGTACTTGCTGCATATGGGCCACAGTCTAAGGCCCAACTCATGGGATTAACTTCTGTTCGAGTTCCTCTTCCTTTTGATCTGACAGAAGAACCGATATACGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGTGCCAAACTCGAAGCACAGAACAGACTCATCAAAGCTCGGAAACCATATCTTCACGAGTCCCGGCATCGACATGCATTGAGGAGGGCTAGAGGTTCTGGTGGTCGCTTTCTCAACAGCAAACAACTCCAGGAAGCGAGCCTCAAATTAGACAGTCGAGGCCTGAAAGTTTCGGAAGCCACTAGGTTGAACCTAGGTGGAGGAAATATGTCAGAATCCAAAAATCATGCTGATGGAGAAAACTACAGAGATGGTTCTGACATCAAAAGTGCTTCTAATAGCGATGGCATGTTCCAGCAACATGAGTCCAGCTTCAGGCTCTCTAGTTGCCCTCCTCACATTGGATGGAACATGCAAGTCTACTCAGCCGATCCCCGCGGCACTTGTGGTGGCGGCGGGAATCAGCAGCATGTGTCTGTTCTCATGTGA 876 0.4658 MGVLPQQRHSTKTLSFQFQDQDSSSTQSTDQSYPEVGSAQSGQISIPCSNSSAHSKCSASGGGLISSSLGSQSLCFPPFPVHHNQSIAHIAFRHAEPCFDGVLAAYGPQSKAQLMGLTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQYRAKLEAQNRLIKARKPYLHESRHRHALRRARGSGGRFLNSKQLQEASLKLDSRGLKVSEATRLNLGGGNMSESKNHADGENYRDGSDIKSASNSDGMFQQHESSFRLSSCPPHIGWNMQVYSADPRGTCGGGGNQQHVSVLM 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0983 291 Gene3D - 129 190 - -
Lele42g0983 291 ProSiteProfiles NF-YA/HAP2 family profile. 129 189 IPR001289 GO:0003700|GO:0006355
Lele42g0983 291 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 131 186 IPR001289 GO:0003700|GO:0006355
Lele42g0983 291 ProSitePatterns NF-YA/HAP2 subunit signature. 134 154 IPR018362 GO:0003677|GO:0016602
Lele42g0983 291 MobiDBLite consensus disorder prediction 210 253 - -
Lele42g0983 291 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 253 IPR001289 GO:0003700|GO:0006355
Lele42g0983 291 SMART cbf3 128 189 IPR001289 GO:0003700|GO:0006355
Lele42g0983 291 MobiDBLite consensus disorder prediction 1 44 - -
Lele42g0983 291 MobiDBLite consensus disorder prediction 235 253 - -
Lele42g0983 291 PRINTS CCAAT-binding transcription factor subunit B signature 132 154 IPR001289 GO:0003700|GO:0006355
Lele42g0983 291 PRINTS CCAAT-binding transcription factor subunit B signature 163 186 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0983 Lele-ChrLele42 22456389 22459164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0983 81 289 CCAAT-HAP2 Transcription Factor Family AT1G17590 48.387 6.33e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele42g0983 CBFB_NFYA 3.7e-26 No_clan