Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0982 ATGTTGATTTGGCCTTTTAAGAACAACGTATGGGGGATTATACTGAGTTGTAAATATGTCTTATGTTTGAGGATTGATATCGTATTGGTTTGTGGTTTGAATGAGACATTTGTTTGCTGGAACTTCTCTGATATCTCAGTTATGTTTAGATTGAAAAGTGTGCATTGGTTTAAGCGGAGACATTCATTGCATCGTCTTCGTTATTCAAGTGCACTGTCGGAGATAGGGAGGAGAGTGAGACGGAGGCGGGACGAAGCCATGGAAGGTGGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCTGGACTCGTAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCCGAAGAAGTCCCTCCAGAACTTCCAGAGCCTGTGCTGGGCATAAACTTCGCTAGGGATGGTATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATCGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTACCAACGATATTTGAAGTTGTTACTGGTACAGCAAAGAAACAACTTAAGGAGAAGTCTTCAGGTTCAAATCACAGTGGCAGTAAATCGAAGTCCAACTCTAAAGCGAGAGGTTCAGAATCTGTGGGAAAGCATTCAAAGGCTATGCAATCAAGAGACGAGGAAGAAGGACTGGATGAAGTAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGATTTCTGGATTTGTTGTGACATCTGCGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCTTCATGCAGTAACAAGAGAGCTCGTCCCTGA 1020 0.4284 MLIWPFKNNVWGIILSCKYVLCLRIDIVLVCGLNETFVCWNFSDISVMFRLKSVHWFKRRHSLHRLRYSSALSEIGRRVRRRRDEAMEGGAQYNPRTVEEVFRDFKGRRAGLVKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQLKEKSSGSNHSGSKSKSNSKARGSESVGKHSKAMQSRDEEEGLDEVDEDEHGETLCGACGENYGTDDFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0982 339 MobiDBLite consensus disorder prediction 231 278 - -
Lele42g0982 339 ProSitePatterns Zinc finger PHD-type signature. 286 332 IPR019786 -
Lele42g0982 339 CDD PHD_AL_plant 285 335 IPR044104 -
Lele42g0982 339 SMART PHD_3 285 333 IPR001965 -
Lele42g0982 339 ProSiteProfiles Zinc finger PHD-type profile. 283 335 IPR019787 -
Lele42g0982 339 Pfam Alfin 97 225 IPR021998 GO:0006355|GO:0042393
Lele42g0982 339 SUPERFAMILY FYVE/PHD zinc finger 277 336 IPR011011 -
Lele42g0982 339 MobiDBLite consensus disorder prediction 231 252 - -
Lele42g0982 339 PANTHER CPG BINDING PROTEIN 94 338 IPR045104 GO:0006355|GO:0042393
Lele42g0982 339 FunFam PHD finger alfin-like protein 278 334 - -
Lele42g0982 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 334 IPR013083 -
Lele42g0982 339 Pfam PHD-finger 286 335 IPR019787 -
Lele42g0982 339 MobiDBLite consensus disorder prediction 253 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0982 Lele-ChrLele42 22451120 22456147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0982 87 338 Alfin-like Transcription Factor Family AT3G42790 77.075 1.78e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele42g0982 Alfin 3.9e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0982 42 22451120 22456147 Lele43g0383 43 3423954 3428820 hybridization
Lele42g0982 42 22451120 22456147 Lele44g0383 44 2802410 2807218 hybridization