Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0980 ATGGCGTCGTCTTCACTATTCCAGTCTCCTCCCTTCTCCTTCCAATGCAAACCCTCTCTTCCACACCCACCACCCAAATCCAACTTCATATTCAACTCTCACTTCCAAAATGGATCCTCCAAACTTCTCCCTCACAACAACAACAACGCCTCGCCGCCAGTCCCACGGGCGGTTTCAAAGAACCGCCGCCCTGCCGACGAGAACATCCGCGATGAGGCTCGCCGCAAATCTGTCACTTACACACATCGATTCTCCGCCAAGTACGTCCCCTTTAATGCCGATCCTTCATCCACAGAATCCTACTCTCTTGACGAGATCGTGTATCGGTCCCAATCTGGTGGGCTTCTCGATGTTCAGCACGACGTGGAAGCTCTGAAGAAATACGATGGCCAGTACTGGCGATCCCTGTTTGACTCTCGTGTGGGTAGAACCACCTGGCCGTACGGCTCCGGTGTTTGGAGCAAGAAGGAATGGGTGTTACCCGAGATCGACAATGACGACATCGTGAGTGCATTCGAAGGAAACTCAAATCTCTTCTGGGCTGAGCGTTTTGGCAAGCAGTTTCTGGGCATGAACGATTTGTGGGTCAAACACTGTGGGATCAGCCACACTGGGAGTTTCAAAGATCTGGGTATGACTGTTTTAGTGAGCCAGGTTAACAGGTTAAGAAAAATGAAACGTCCTGTTGTGGGTGTTGGTTGTGCCTCCACAGGGGACACCTCTGCTGCTTTATCTGCTTATTGTGCTTCTGCAGGAATCCCATCGATTGTTTTTTTGCCTGCTAATAGGATTTCCATTGCTCAACTGGTCCAGCCAATTGCAAATGGTGCATTTGTTTTGAGCATTGATACAGATTTTGATGGGTGTATGCATTTGATTAGGGAGGTTACTTCTGAGTTACCTATATACTTGGCTAATTCTCTGAACAGCTTGAGACTAGAAGGGCAGAAAACTGCAGCTATTGAGATTTTGCAGCAGTTTAATTGGCAAGTACCTGATTGGGTTATTGTGCCAGGAGGGAATCTTGGAAACATCTATGCATTCTATAAAGGGTTTAACATGTGCAAAGAGTTAGGACTAGTTGATAGGATTCCTAGACTTGTTTGTGCTCAAGCTGCAAATGCTAATCCTCTCTATCAGTACTTCAAGTCAGGGTGGAAAGAATTTAAGCCTGTAAAGGCCAACACTACATTTGCATCTTCCATACAAATTGGTGATCCTGTTTCAATAGATAGAGCTGTTTATGCACTGAAGAACTCAAATGGCATTGTTGAGGAAGCAACAGAAGAAGAACTAATGGATGCTACGGCTCAAGCAGATTCTACTGGCATGTTTATATGCCCTCATACTGGGGTTGCTTTGACCTCATTGATTAAATTAAGGAAAAAGGGGATCATAGGGCCTACAGATAGGACTGTGGTAATCAGTACTGCTCATGGGTTGAAGTTTACACAATCGAAAATTGATTACCATTCAAAAGATATTGAGGGCATGGCTTGCAAATTTGCTAACCAACCAGTGCAAGTAAAGGCGGATTTTGGGTCCGTTATGGATGTTTTGAAGAAGTATTTGCATAGTAAGGCACCAAAACACTAG 1596 0.4536 MASSSLFQSPPFSFQCKPSLPHPPPKSNFIFNSHFQNGSSKLLPHNNNNASPPVPRAVSKNRRPADENIRDEARRKSVTYTHRFSAKYVPFNADPSSTESYSLDEIVYRSQSGGLLDVQHDVEALKKYDGQYWRSLFDSRVGRTTWPYGSGVWSKKEWVLPEIDNDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANRISIAQLVQPIANGAFVLSIDTDFDGCMHLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFNMCKELGLVDRIPRLVCAQAANANPLYQYFKSGWKEFKPVKANTTFASSIQIGDPVSIDRAVYALKNSNGIVEEATEEELMDATAQADSTGMFICPHTGVALTSLIKLRKKGIIGPTDRTVVISTAHGLKFTQSKIDYHSKDIEGMACKFANQPVQVKADFGSVMDVLKKYLHSKAPKH 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0980 531 PANTHER CYSTATHIONINE BETA-SYNTHASE 169 488 - -
Lele42g0980 531 Pfam Pyridoxal-phosphate dependent enzyme 171 477 IPR001926 -
Lele42g0980 531 TIGRFAM thrC: threonine synthase 158 483 IPR004450 -
Lele42g0980 531 MobiDBLite consensus disorder prediction 60 74 - -
Lele42g0980 531 CDD Thr-synth_1 153 483 - -
Lele42g0980 531 MobiDBLite consensus disorder prediction 40 55 - -
Lele42g0980 531 FunFam Threonine synthase 1, chloroplastic 268 528 - -
Lele42g0980 531 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 198 212 IPR000634 GO:0006520|GO:0030170
Lele42g0980 531 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 61 525 IPR036052 -
Lele42g0980 531 MobiDBLite consensus disorder prediction 40 74 - -
Lele42g0980 531 Gene3D - 63 284 IPR036052 -
Lele42g0980 531 Gene3D - 285 530 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0980 Lele-ChrLele42 22442182 22443777 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0980 42 22442182 22443777 Lele43g0385 43 3436486 3446202 hybridization
Lele42g0980 42 22442182 22443777 Lele44g0385 44 2813030 2814625 hybridization