Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0971 ATGGCGTACCAGACCCCCGATCGCGACTCAGAATCCGGAATGCAAAATCAAACTCGCCTTTACAATCCCTACAAGGACCTCGAGGTACCTATTCGAAATCTTTACCAGCTTCCGACATCTCCTAAGTACCTTTTCGTCGAAGAGGCCCGCTGCAAGCGTCGATCCTGGGGTGAGAACCTCACCTTTTACACTGGCTGTGGATACCTTGCCGGCGCCGTTGGTGGCGCTGGACTGGGACTCGTCGATGGCGTCAAGTCCTTTGAATCTGGCGACACCACCAAGCTTCGGATTAACCGTGTTCTTAACTCATCTGGCCATGCGGGTCGGTCTTGGGGCAACCGACTTGGCGTGATGGGGTTGATGTATGCTGGTATCGAGAGCGGGATTCAGGCCTTCAGGGATACCGATGATGTCTGGAATAGTATAGCGGCAGGGCTTGGCACGGGTGCATTGAATGCATAA 462 0.5411 MAYQTPDRDSESGMQNQTRLYNPYKDLEVPIRNLYQLPTSPKYLFVEEARCKRRSWGENLTFYTGCGYLAGAVGGAGLGLVDGVKSFESGDTTKLRINRVLNSSGHAGRSWGNRLGVMGLMYAGIESGIQAFRDTDDVWNSIAAGLGTGALNA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0971 153 Pfam Tim17/Tim22/Tim23/Pmp24 family 62 151 - -
Lele42g0971 153 PANTHER TIM23 30 151 IPR045238 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0971 Lele-ChrLele42 22387317 22387778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0971 7 151 Chloroplast and Mitochondria Gene Families AT1G17530 63.946 2.25e-69 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1168 39 20361046 20366233 Lele42g0971 42 22387317 22387778 CCT
Lele42g0971 42 22387317 22387778 Lele43g0386 43 3454899 3455465 hybridization
Lele42g0971 42 22387317 22387778 Lele44g0387 44 2825283 2825849 hybridization