Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0964 ATGTTTGGCAATAACGTCAATAATAACACTAATCATTATAAGAGTGAAGTTCCAATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATAGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCCGTGTTTGCTCCTTTCCTCACTAGCCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATTAAAGCTCTTATACCTGCTCCAGCTGCTAACGTTCAAAATGCTACTCCTGCTGCTCCAGTTCGTCAAAGTGCAGCTTTTGATACCGCAATCGATGACGCTACTCAAAAAGCACAGGATGTGAAGAATGCTCCTCGGTATAACGGAATGGTTTTTGAAGCCCTGTCAACAATAAAAGATACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTACCTCCAAATTTCAGAAGGGGGTTAAGTATGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGGTACAAAATTGTTACAAGATAAAAAAGGACGGTCCTTCCGGGTCAAAAACACTTCTAGCGAAACAAAAGGACATCTGGCAACATCAACCACCAGCCTCTAGTTTAGTGCCGCCTTATGAGAGCGCTAAGGATGCTGCTGATACTGCAGCCTACAGACTTGCAGAAGCCGAAAACAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAAGCAGAAAAACTCGCAAAATTTGCCGCAGAAGCTGATGCAGTATTACAACTAGTGAAAGAGATTTATGAACAATGTACTGATAAACAGTTCTATCTACATGTTAATACCCATGTTCGCGTGGTGAAACTATTGTCTTGGCTTGAAGTTGTTGAAATACAAGGGCGATCATAG 957 0.4253 MFGNNVNNNTNHYKSEVPMGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPVFAPFLTSRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKALIPAPAANVQNATPAAPVRQSAAFDTAIDDATQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNFRRGLSMRLRRLVAQGKLEKVQNCYKIKKDGPSGSKTLLAKQKDIWQHQPPASSLVPPYESAKDAADTAAYRLAEAENKSFLAAEAVKEAEKLAKFAAEADAVLQLVKEIYEQCTDKQFYLHVNTHVRVVKLLSWLEVVEIQGRS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0964 318 Pfam linker histone H1 and H5 family 136 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele42g0964 318 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 134 202 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele42g0964 318 SMART sant 22 77 IPR001005 -
Lele42g0964 318 CDD SANT_TRF 24 74 - -
Lele42g0964 318 FunFam Telomere repeat-binding factor 1 20 76 - -
Lele42g0964 318 SUPERFAMILY "Winged helix" DNA-binding domain 134 212 IPR036390 -
Lele42g0964 318 FunFam Telomere repeat-binding factor 1 26 105 - -
Lele42g0964 318 Gene3D - 19 76 - -
Lele42g0964 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 79 IPR017930 -
Lele42g0964 318 SMART h15plus2 132 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele42g0964 318 Gene3D - 130 220 IPR036388 -
Lele42g0964 318 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
Lele42g0964 318 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Lele42g0964 318 ProSiteProfiles Myb-like domain profile. 22 75 IPR001005 -
Lele42g0964 318 PANTHER SINGLE MYB HISTONE 4 19 291 IPR044597 GO:0003691
Lele42g0964 318 Coils Coil 232 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0964 Lele-ChrLele42 22313897 22318674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0964 19 295 Single Myb Histone (SMH) Gene Family AT1G17520 51.546 2.91e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g0964 Linker_histone 8.2e-11 CL0123