Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0948 ATGAAGGTTGAGGTTGAAGGTGAAGATGGAACCAAATTCGTGTTGGGGACGCGCGGTGAGATCCTGTTTGGACGAGGCTCAGGGTTTAACACCAACGACCGCACCGTTTCTCGCCGTCACGTTTCGTTCCGACTGAGAAGCTCGCTTGAAAATAGCGATGCCGGAGCTGAGCCTAGGGTTTCGTTTGAGGTTATAGGAAGGAACCCCATTTGGGTGTTAAGCAAGAACCATGGAGAAATTCGAATTTTCAGGAAGTTCGAGAAGGGTGAGATGGAGGTTGGCGACAGTTTCTGTTTGTCTGGGAAGTCGCTCGTTTGGTTCGATTTGAAAGACTGCAAAGTTCAACAGGGAAAGGAGACGGTTTCGGGTATTGAGAAGGAGGTTTCTGAGTGTTCAAGTAATGGTCTTGACATCGAGGACATTGATGTTTCAGGAATTGATCCTGCTAAAGAGTTTGGTTTTGTTGTGATGGGGCATGAGTTTGACCACTATCCCAAGGACATGATTCTCAGTGTGAAGAGTTGGAACTGGTTCCTGGAGGAACCTTACAAAGATGAAGAAGATGAGGATGATTTTGAAGAGAAGAAGACGGCCATAGGAGGAAAGCGAAAGAAAGGTAAAGACAACAAAGATGAAGATGGTGACTGGACTGGGGAAAGTGAAGAGGATACAGACATTGTTGCAAGTGTGAGAAAAGTAAGAAGATCTGGGTACTCTACTCGGTCAAAAGACCAAAATAAACAAACCAAGGACAGCAAAGGTGGTAAAAGTTCTGGACGAAAGAAAGCTCCTAGTATGGATGAAACTGTTGAAGATGAAGATGAGACATTGGGAGGCTTCGTTGTTGATGATGAAGAAGATGATCAGGAAGAGGAAAACAGTGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGAAGAAGATGAAGATTCCGTGCTTGATTTTCCAAAACCTCAAGGCTCCCAAAATGATATGGCTTTGGCTGCATTGGCTTGCCTGAGGTGTCTATCAGATAGCTATGGACTTATGGGTGATGCGTCCTATGGTGTGGCTTCCGAGTCTGCTGATGACTAG 1080 0.4574 MKVEVEGEDGTKFVLGTRGEILFGRGSGFNTNDRTVSRRHVSFRLRSSLENSDAGAEPRVSFEVIGRNPIWVLSKNHGEIRIFRKFEKGEMEVGDSFCLSGKSLVWFDLKDCKVQQGKETVSGIEKEVSECSSNGLDIEDIDVSGIDPAKEFGFVVMGHEFDHYPKDMILSVKSWNWFLEEPYKDEEDEDDFEEKKTAIGGKRKKGKDNKDEDGDWTGESEEDTDIVASVRKVRRSGYSTRSKDQNKQTKDSKGGKSSGRKKAPSMDETVEDEDETLGGFVVDDEEDDQEEENSEEEEEEEEEEEEFEEDEDSVLDFPKPQGSQNDMALAALACLRCLSDSYGLMGDASYGVASESADD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0948 359 PANTHER SMAD/FHA DOMAIN-CONTAINING PROTEIN 4 309 - -
Lele42g0948 359 SUPERFAMILY SMAD/FHA domain 5 99 IPR008984 GO:0005515
Lele42g0948 359 MobiDBLite consensus disorder prediction 237 268 - -
Lele42g0948 359 MobiDBLite consensus disorder prediction 194 214 - -
Lele42g0948 359 Coils Coil 282 313 - -
Lele42g0948 359 MobiDBLite consensus disorder prediction 269 313 - -
Lele42g0948 359 Gene3D - 3 112 - -
Lele42g0948 359 MobiDBLite consensus disorder prediction 186 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0948 Lele-ChrLele42 22199131 22202232 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0948 42 22199131 22202232 Lele37g0307 37 2582706 2585918 CCT
Lele42g0948 42 22199131 22202232 Lele38g0293 38 2309876 2310460 CCT
Lele42g0948 42 22199131 22202232 Lele39g1117 39 19691391 19694657 CCT
Lele42g0948 42 22199131 22202232 Lele40g0277 40 2210805 2211569 CCT
Lele42g0948 42 22199131 22202232 Lele44g0410 44 3018612 3020076 hybridization