Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0941 ATGCTTCTACTGATTATTCTTCTCTTTCAGCTGCATTTAGTTTCCAGTGCTCCACAACTTCATGAGTATAGAGATGCTAGGTTCTTAAGATTGTTGTCATTTGTCTTTGAAACAACCACCAATCTGCATCATTCAAGTATTGCGCTTCCACCATCCCAATCATCTTCTAGAGGTCCTGCAAGTATTGCAATTTCACCTTCAAAGTCATTACCTCATGGTTCTGTAGATTCTCCAATATCACAACATCATAAGCATCACCATTCCAGAAGAAAGTTCAGAAACCCAACCCCTACTTACAATCATGGAGGTCATTCAGTTTTTCCTGCAAAGCCTCCTTTTCGTGCTCCAAAGACAAGGAATTTGCCTGCACCTGCGCCTGCACCATCGCGAGCATTTTTTTCACCTCACTTTGGTTCCATCTTTTGTCCATTAGCTCCTTCTCCTTCTCCTAGAGTTCTACCCTTTCATTCGTCCTCAAAGCATATGAAGAATCCATCACCATCAACTGTTTTGTCTTTACCACCTCCACCTCCCAATAACGATTGCATGTCAGTGACTTGTTCAGAGCCTCTTACATATACGCCTTCTGGATCACCTTGTGGTTGTGTTTGGCCACTGCAAGTTAAGCTCGACCTTGGCATTGCAATATACAAGTTTTTCCCTCTGGTTTCAAAGCTTGCTGAGGAAATTGCAGCCAGCGCTTCTCTTAATCGGAACCAAGTTCGCATTGTGGGAGCTGATGCAGCTAATCACCAACTAGAGAAAACCAATGTTCTTATAAACCTAGTACCTGAAGGAGTAAATTTCGATGATGCAACAGCATTTTCAATATATAAGAAATTCTGGCACAAGGAGATTCTCACAGATGCTTCCCTCTTTGGAGCCTATGAAGTGCTTTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCTTCTCCTTCAAGCATCTCTAGTATGGATGATGTACCATACCCTGGCTATGACTACAATGGAACAATAATGAAACCTTTAGGAGTAGATGTACCAGTGAATGAAAAGCATGGGAATAGTGAAAGAGGAAGCATGATTATAATAATTGTGTTGTCATGTATAACTCTATCTGTTCTATTCATTGGAGCTGCATGGCTGTATCTGTTGAAATGTGGTTCTTGTGTTCAACAGCCTGAACATTTCCCAGATGATTCAATCCTATCATCTTCAAAACCATCAGGTGCTATTAAGTCATTGACTTATGGGAGCATACCAGGTTCTAGATCAATGTCATTCAGCTCTGGAACAATAATATATACAGGATCTGTCAGGACCTTCACTTTGAATGAAATGGAGAAAGCAACAAACAACTTTGATGCTCTTAGAATAATAGGAGAAGGTGGATTTGGGCTTGTCTATAAAGGTGTTCTACATGATGGAAGGGATGTGGCTGTGAAGATTCTGAAACGGGATGATCATCACGGTGGCCGTGAATTCTTGGCAGAAGTCGAGATGCTTAGCCGCCTTCACCACAGAAATCTAGTCAAATTGATAGGTATATGTATGGAGAATCAAACACGCTGCTTAATCTATGAGCTTATCCCTAATGGAAGTGTGGAATCCCACTTGCATGGTGCTGACAAGAAAACTAGTCCCCTTGATTGGAATGCTAGGATGAAGATTGCGCTCGGTGCAGCACGGGGATTGGCATATCTCCATGAAGATTCAAATCCCTGTGTAATACACAGAGACTTCAAGGCTAGCAACATCTTGTTGCAACATGATTTTGCACCAAAGGTTGCAGATTTTGGATTGGCCAGAACAGCACTGGATGAGGGAACCAAGCACATTTCCACACATGTTATGGGAACATTTGGCTACCTGGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTGAAAAGTGATGTGTACAGCTATGGAGTTGTACTCCTTGAACTCCTAACAGGAAGAAAACCTGTGGATTTGTCACAGCCACCAGGTCAAGAAAACCTAGTGGCTTGGGTTCGTCCGCTTCTCACGAGCAAGGAGGGTTTACAGACAATCATAGACCCGGTTTTAGAGAGCAACGTGTCTTTTGAAACCGTGGTAAAAGTTGCAGCTATCGCATCGACATGTGTGCAGCCAGAAGTCTCTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGTTGGTTTGCTTTGAGTTTGATGATACAAGCATTATGAGATCAAGAAGCTTCCATGAAAAGAGTCTTCTAATGGAAGGAGATGGGAAATTTTCAGGTGAGATGATGACGGGTTTTCAGACATTAACGGAATCAAAGTTGCTCAGTCCCTTATCAGGCCAGGGATTTGAGTCCTTCAGAAGGCATTCTGCTTCAGAGCCTCTCACTACTGAGAAAAATAGGAAGGAATGGCAGGAATTGCGAAGTTCATTAGGAGGGAGCATTAGTGAACATGGATTTTCAAACTTCCCCACAAGTTGA 2466 0.4266 MLLLIILLFQLHLVSSAPQLHEYRDARFLRLLSFVFETTTNLHHSSIALPPSQSSSRGPASIAISPSKSLPHGSVDSPISQHHKHHHSRRKFRNPTPTYNHGGHSVFPAKPPFRAPKTRNLPAPAPAPSRAFFSPHFGSIFCPLAPSPSPRVLPFHSSSKHMKNPSPSTVLSLPPPPPNNDCMSVTCSEPLTYTPSGSPCGCVWPLQVKLDLGIAIYKFFPLVSKLAEEIAASASLNRNQVRIVGADAANHQLEKTNVLINLVPEGVNFDDATAFSIYKKFWHKEILTDASLFGAYEVLYVHYPGLPPSPPSSPSSISSMDDVPYPGYDYNGTIMKPLGVDVPVNEKHGNSERGSMIIIIVLSCITLSVLFIGAAWLYLLKCGSCVQQPEHFPDDSILSSSKPSGAIKSLTYGSIPGSRSMSFSSGTIIYTGSVRTFTLNEMEKATNNFDALRIIGEGGFGLVYKGVLHDGRDVAVKILKRDDHHGGREFLAEVEMLSRLHHRNLVKLIGICMENQTRCLIYELIPNGSVESHLHGADKKTSPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLQHDFAPKVADFGLARTALDEGTKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVAWVRPLLTSKEGLQTIIDPVLESNVSFETVVKVAAIASTCVQPEVSQRPFMGEVVQALKLVCFEFDDTSIMRSRSFHEKSLLMEGDGKFSGEMMTGFQTLTESKLLSPLSGQGFESFRRHSASEPLTTEKNRKEWQELRSSLGGSISEHGFSNFPTS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0941 821 MobiDBLite consensus disorder prediction 46 120 - -
Lele42g0941 821 ProSitePatterns Protein kinases ATP-binding region signature. 455 477 IPR017441 GO:0005524
Lele42g0941 821 MobiDBLite consensus disorder prediction 802 821 - -
Lele42g0941 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Lele42g0941 821 MobiDBLite consensus disorder prediction 782 821 - -
Lele42g0941 821 FunFam receptor-like serine/threonine-protein kinase ALE2 422 524 - -
Lele42g0941 821 CDD STKc_IRAK 455 723 - -
Lele42g0941 821 Gene3D Transferase(Phosphotransferase) domain 1 525 738 - -
Lele42g0941 821 Pfam Protein tyrosine and serine/threonine kinase 452 722 IPR001245 GO:0004672|GO:0006468
Lele42g0941 821 MobiDBLite consensus disorder prediction 786 801 - -
Lele42g0941 821 MobiDBLite consensus disorder prediction 46 76 - -
Lele42g0941 821 PANTHER OS01G0750732 PROTEIN 174 740 - -
Lele42g0941 821 ProSiteProfiles Protein kinase domain profile. 449 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0941 821 FunFam Receptor-like serine/threonine-protein kinase ALE2 525 741 - -
Lele42g0941 821 SUPERFAMILY Protein kinase-like (PK-like) 428 723 IPR011009 -
Lele42g0941 821 Gene3D Phosphorylase Kinase; domain 1 421 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0941 Lele-ChrLele42 22128535 22132420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0941 179 814 Receptor kinase-like Gene Family AT5G56890 56.902 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele42g0941 PK_Tyr_Ser-Thr 8.9e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0277 38 2201820 2203780 Lele42g0941 42 22128535 22132420 CCT
Lele39g1131 39 19806236 19810826 Lele42g0941 42 22128535 22132420 CCT
Lele40g0263 40 2096905 2103857 Lele42g0941 42 22128535 22132420 CCT
Lele42g0941 42 22128535 22132420 Lele43g0424 43 3736594 3740295 hybridization
Lele42g0941 42 22128535 22132420 Lele44g0416 44 3071895 3075862 hybridization