Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0938 ATGGAATTAGCCATACAAAAGCAAAGAAGATATTATCTTCTAACCTCATTTGTACGGGGTGGGGCCCCCAAATTGATGAAACTAGGGATACAAGGAAACAGCACTGATGAAGAAAGTGCTCCGAACACTCTAGTTATAGCAGACTGTGAGATTGTGAAGCCTAGGGTTGCATCAGAAGACATAAGAATGTTTTGTGAAGACGCTCGCTCCCCCATTATCAGGAAGTACAAATCCATTATTCACCCGGGAGAGGTGAACAGAATCAGGGAAATGCCACAACATGATAATATGTTAGTCACACATACAGACAGACCTGAGGTAATACTTTGGAATATTGACACACAACCAGCTCGCCATGCTCTCCCTGGAGCTGAATATTCCTTGCCCAATCTGATACTGCTTGGGCACACAGATATTGCTCAATTTGCTTTGGCTGTTTCTCCTTTTGAACCTTATGTTCTTTCTGGAGGAAGGGACAAGAATGTTATTTTATGGAGTGTGAACGACCAAATGACAAATTTAGCAGAGGGACCACCCTACTTTAGACTTGGTCCTCGTTTTGGTCGGAATAGTTATAGTTATAACCCAGCTATCGGCCCACGTGGCACCTTCGAAGGACACACTGATACTGTCGAAGATGTCCAATTTAACCCCACAAATCCAAGAGAGTTCTGTAGCGTCGGGGACGATTCTAAATTGATCATATGGGATGATCGTTTTGGGTCAAATTCTGTTCTCAAGGTCGATGGAGCTCATCGTGAGGAAGATATTCACTGTGTCGAATGGAATAAATTCAATTCTAATTATATTCTGACTGGTTCTGCTGATAGTTCAGTTCATATGTATGATCTTCGATACCTTGTCAATGCCCGTGGACGTAATCCTGTTTTTACGTTCCAGGGACATGATGCCTCTATTCTTTGTGTTCAGTGGTGCCCAGAAAGAGGATCCGTATTTGGCACTTCGGGTGATGATGGGGTTATCAACATGTGGGACTATGAAAAGGTTGGGAGAGCTTCATCTTCTGATGGTCTGAGACAAGAAAGGGCTCCTCCTGGTTTATTCTTTCGACATGTTGGTCATAGGCATAAGGCAATTGAATTCCAGTGGAATCCATCTGATCCTTGGACTATTGCTAGTCTGTCTCATGATTGCAGAGGCCGCGGAGGAGGTACCTTACAGATGTGGCGAATGATGGATATAATATATGAAGGGGTTGAGAACGAGGAGAGGAAAATGGCAGAGTTGAATATGTTCCGACCTTGCACTGTGGGACGAAGCCTATCATCTATCAAGGATTTATCTCTTAGCTTCGTCTAG 1320 0.4364 MELAIQKQRRYYLLTSFVRGGAPKLMKLGIQGNSTDEESAPNTLVIADCEIVKPRVASEDIRMFCEDARSPIIRKYKSIIHPGEVNRIREMPQHDNMLVTHTDRPEVILWNIDTQPARHALPGAEYSLPNLILLGHTDIAQFALAVSPFEPYVLSGGRDKNVILWSVNDQMTNLAEGPPYFRLGPRFGRNSYSYNPAIGPRGTFEGHTDTVEDVQFNPTNPREFCSVGDDSKLIIWDDRFGSNSVLKVDGAHREEDIHCVEWNKFNSNYILTGSADSSVHMYDLRYLVNARGRNPVFTFQGHDASILCVQWCPERGSVFGTSGDDGVINMWDYEKVGRASSSDGLRQERAPPGLFFRHVGHRHKAIEFQWNPSDPWTIASLSHDCRGRGGGTLQMWRMMDIIYEGVENEERKMAELNMFRPCTVGRSLSSIKDLSLSFV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0938 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 237 IPR001680 GO:0005515
Lele42g0938 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 237 - -
Lele42g0938 439 PANTHER WD40 REPEAT FAMILY 35 406 - -
Lele42g0938 439 Pfam WD domain, G-beta repeat 294 332 IPR001680 GO:0005515
Lele42g0938 439 Pfam WD domain, G-beta repeat 132 166 IPR001680 GO:0005515
Lele42g0938 439 Pfam WD domain, G-beta repeat 250 283 IPR001680 GO:0005515
Lele42g0938 439 Pfam WD domain, G-beta repeat 202 237 IPR001680 GO:0005515
Lele42g0938 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 341 IPR001680 GO:0005515
Lele42g0938 439 SUPERFAMILY WD40 repeat-like 75 398 IPR036322 GO:0005515
Lele42g0938 439 Gene3D - 26 416 IPR015943 GO:0005515
Lele42g0938 439 SMART WD40_4 292 332 IPR001680 GO:0005515
Lele42g0938 439 SMART WD40_4 242 283 IPR001680 GO:0005515
Lele42g0938 439 SMART WD40_4 351 397 IPR001680 GO:0005515
Lele42g0938 439 SMART WD40_4 126 166 IPR001680 GO:0005515
Lele42g0938 439 SMART WD40_4 197 237 IPR001680 GO:0005515
Lele42g0938 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0938 Lele-ChrLele42 22090142 22097287 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0938 42 22090142 22097287 Lele37g0324 37 2717727 2723140 CCT
Lele42g0938 42 22090142 22097287 Lele38g0307 38 2419146 2421252 CCT
Lele42g0938 42 22090142 22097287 Lele39g1099 39 19563599 19568913 CCT
Lele42g0938 42 22090142 22097287 Lele43g0427 43 3766133 3772919 hybridization
Lele42g0938 42 22090142 22097287 Lele44g0419 44 3106003 3121696 hybridization