Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0932 ATGACTGAGGCTGAGGTTAATGAGTATCGGCAGAAGAGGGATATAATTGTTGAAGGCCGAGATGTCCCAAAACCAGTCAAAAGCTTTGACCTTGCTGGTTTCCCAGAGTATGTTATGCAAGAAATTACAAAAGCTGGTTTTGTTGAACCCACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATAGGAATAGCCGAAACTGGATCAGGGAAGACCCTTGCTTATTTACTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCAAGAACCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATATATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGATTGAGTCAAATCATACTAACTTACGAAGAGTTACATACCTTGTATTGGATGAGGCTGATAGGATGTTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCCCAGATTCGTCCAGACCGTCAAACGTTATGCTGGAGTGCGACCTGGCCAAAGGAGGTTGAGCAGCTGGCGAGTCAGTCCCTTTATAACCCATACAAAGTGATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACTCGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATACATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCCGGAAAGAGTTCTATTATGACTGCAACCGATGTTGCTGCTCGTGGTTTAGATGTGAAGGATGTGATGTTTGTAATAAATTACGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGTAGAGCTGGTGCAAAGGGAACTGCGTATACATTCTTTACTGCTGCGAATGCTAGATTTGCAAAGGAACTTATAGGCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGCACGTGGAGCACCTCCTCCGCCTTCAGGTTATGGAGGTTTCCGGGGGAGAAGTTATGGCGGTCGCCCACTGAGATGA 1293 0.4501 MTEAEVNEYRQKRDIIVEGRDVPKPVKSFDLAGFPEYVMQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPIQEPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLASQSLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSSIMTATDVAARGLDVKDVMFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRSYGGRPLR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0932 430 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 406 - -
Lele42g0932 430 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 406 IPR001650 -
Lele42g0932 430 MobiDBLite consensus disorder prediction 406 430 - -
Lele42g0932 430 FunFam ATP-dependent RNA helicase RhlB 237 409 - -
Lele42g0932 430 CDD SF2_C_DEAD 246 376 - -
Lele42g0932 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 382 IPR027417 -
Lele42g0932 430 SMART ultradead3 46 249 IPR014001 -
Lele42g0932 430 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 233 IPR014001 -
Lele42g0932 430 CDD DEADc_DDX5_DDX17 38 233 - -
Lele42g0932 430 Gene3D - 1 238 IPR027417 -
Lele42g0932 430 Gene3D - 239 408 IPR027417 -
Lele42g0932 430 Pfam DEAD/DEAH box helicase 51 222 IPR011545 GO:0003676|GO:0005524
Lele42g0932 430 FunFam probable ATP-dependent RNA helicase DDX17 1 236 - -
Lele42g0932 430 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 179 187 IPR000629 -
Lele42g0932 430 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Lele42g0932 430 Pfam Helicase conserved C-terminal domain 258 367 IPR001650 -
Lele42g0932 430 SMART helicmild6 286 367 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0932 Lele-ChrLele42 22037820 22042317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0932 15 387 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 2.47e-78 247