Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0925 ATGCCGATGAGTCGAGAACAAGAGAAGCGAGTGAAGCAGGAAAAAGGCTCCGATTCTGCTGAGAAGGTTATTGTTGCCGTTAAGGCGTCAAAGGAAATTCCAAAGACTGCTCTGGTTTGGTCTTTGACTCATGTTGTTCAACCTGGAGATTGCATCACAGTACTAGTAGTTGTTCCTTCACAAAGTTCAGGTAGAAGATTATGGGTTTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGCCACAAGAAGGCTGCTTCAGGAACAACCTCAGAGCAGAAGTGTGATATTATCACCGATTCTTGCTCCCAGATGATCCTTCAGCTTCATGACGTCTATGACCCAAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTTGCTGCAGAGGCCAAGAAAGCCCATGTCAGTTGGGTCGTATTAGACAAACATCTCAAAAATGAAGAAAAACGGTGCATGGAAGAGCTGCAATGCAATATTGTGGTTATGAAGCATTCACAACCAAAAGTACTCCGCTTGAATTTGGTTGGCTCGCGCAAAAAGGATCCTGAAGAAGGAGGCCAAGTACCTTCTGGGAAAGATGAGATGCATGGAAAGCAAACCAAAAAGAAGAATGATCGTTTGAATTCCATTAAAGGACCAGTTGTCACTCCAACTAGCAGCCCAGAGTTGGGGACACCATTCACGGCAACTGAAGCAGGTACATCATCAGTTTCAAGCTCCGATTTAGGAACATCACCATATTTCATCCCAGAGACAAGTGGTGGTGAGTTGAAGAAAGAGGAAACAATCGATGAAAATCAAGAACGTGATGATACTAACTCAGACACAGAGAGTGAAAATCTGTCCACATCCTCAGCAAGTCTGAGATTCCAGCCATGGATCACAGAATTACTTCGACATCAACAATCATCTCAGCGCACAGAAGAAAGACCAGAGAAACAAGATAGGCCTCATACATCTACAACCAGAGCTTTGCTAGAAAAGTTCTCGAAGCTTGATAGAGAAGCTGGAATTGATAGCTCAGCCAGATGGACAACTGAGTTGGATTTCAGTGGAAATATGAGAGAAACAATAGCATTAACCAGAAACGCCCCTCCTGGACCCCCTCCATTATGTTCAATATGTCAACACAAGGCACCTGTTTTCGGAAAGCCTCCAAAGTGGTTCAGCTATGCTGAGTTGGAGCTTGCAACCGGCGGATTTTCACAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTACATAGGGGGGTTCTTCCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCCAGTTCTCAAGGTGATCTCGAATTTTGCTCGGAGGTTGAAGTCCTGAGCTGTGCTCAGCATCGAAATGTTGTGATGCTAATTGGGTTCTGTATAGAGGATAAGAGAAGGCTGCTGGTTTATGAGTATATATGCAATGGATCACTAGATGCTCATTTATATGGACGACAGCAAAAGCCATTAGAATGGTCAGCAAGACAAAAAATTGCAGTTGGAGCTGCCCGAGGGTTGAGATATCTCCATGAAGAGTGTAGAGTCGGTTGTATTATCCACCGTGATATGCGGCCAAACAACATCCTCATCACCCATGATTTTGAACCACTGGTTGGTGATTTTGGACTAGCGAGGTGGCAACCTGACGGAGACACAGGTGTTGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGTGGACAAATTACTGAAAAAGCTGATGTTTATTCCTTTGGAGTGGTATTAGTGGAACTTGTTACGGGACGAAAAGCTGTGGATCTCACTCGACCCAAGGGACAGCAGTGTCTCACTGAGTGGGCACGCCCACTGTTGGAAGAATATGCCACAGAGGAACTGATTGATCCAAGGCTGGAAAATCGCTATTCAAGACATGAGGTCAATTGCATGCTGCATGCTGCATCATTATGCATTCGCCGTGATCCTCATTCTAGACCGCGCATGTCACAGGTTCTGCGAATACTGGAGGGTGACATGGTGCTGGAAACAAATTACATTTCACATTCCGGCTATGATGTGGGAAATCGGAGCGGCCGAATCTGGGCGGGGCAGCACCACTGTAGTGGTCCATTGATAGATGAGTCTCTGGAATCGTTCAGTGGGAAGTTGTCACTTGAGAAATACAGGCCCTCCTCCCTTTGGAAAAGGGACGAGGTTAGGAGTACTGCACGTGAAGATATGTACAGTGGTTTCCCCTACTCACATTGA 2274 0.4516 MPMSREQEKRVKQEKGSDSAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITVLVVVPSQSSGRRLWVFPRFAGDCASGHKKAASGTTSEQKCDIITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAHVSWVVLDKHLKNEEKRCMEELQCNIVVMKHSQPKVLRLNLVGSRKKDPEEGGQVPSGKDEMHGKQTKKKNDRLNSIKGPVVTPTSSPELGTPFTATEAGTSSVSSSDLGTSPYFIPETSGGELKKEETIDENQERDDTNSDTESENLSTSSASLRFQPWITELLRHQQSSQRTEERPEKQDRPHTSTTRALLEKFSKLDREAGIDSSARWTTELDFSGNMRETIALTRNAPPGPPPLCSICQHKAPVFGKPPKWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDAHLYGRQQKPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYATEELIDPRLENRYSRHEVNCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVLETNYISHSGYDVGNRSGRIWAGQHHCSGPLIDESLESFSGKLSLEKYRPSSLWKRDEVRSTAREDMYSGFPYSH 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0925 757 CDD STKc_IRAK 413 679 - -
Lele42g0925 757 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
Lele42g0925 757 ProSitePatterns Tyrosine protein kinases specific active-site signature. 528 540 IPR008266 GO:0004672|GO:0006468
Lele42g0925 757 PANTHER OS01G0750732 PROTEIN 299 684 - -
Lele42g0925 757 CDD USP_Like 22 149 - -
Lele42g0925 757 MobiDBLite consensus disorder prediction 179 292 - -
Lele42g0925 757 MobiDBLite consensus disorder prediction 217 253 - -
Lele42g0925 757 MobiDBLite consensus disorder prediction 308 328 - -
Lele42g0925 757 Pfam Protein tyrosine and serine/threonine kinase 411 676 IPR001245 GO:0004672|GO:0006468
Lele42g0925 757 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 379 482 - -
Lele42g0925 757 SUPERFAMILY Protein kinase-like (PK-like) 391 680 IPR011009 -
Lele42g0925 757 FunFam Dual-specific kinase DSK1-like 14 169 - -
Lele42g0925 757 MobiDBLite consensus disorder prediction 306 328 - -
Lele42g0925 757 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0925 757 Gene3D Transferase(Phosphotransferase) domain 1 483 689 - -
Lele42g0925 757 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 483 686 - -
Lele42g0925 757 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0925 Lele-ChrLele42 21990702 21994527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0925 387 734 Trihelix Transcription Factor Family AT1G70460 48.189 4.61e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lele42g0925 PK_Tyr_Ser-Thr 3.4e-41 CL0016