Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0909 ATGGATGGTCTTCTTCCCTGGGATACTTGTCAATTTGACACCAATATGCCGATCTTTGAAGAGGAAGCTGCAGGCTACTCCATGCCTAGCTTGGATTATCAAATTCAAGAGACGCAGAACAAAACAGCTCAAACAGATCATCGCTTTAATCTTTATTCAGCTTTTGATGATCTTGTGCCAGATTTCCATGATTTCGATACCGATATGGCCGACCACCGGCAACAACAATTCATCAATGGCGACACAGATGACGGGAATATTTCCATGATTCTATCTGATAGCTATATAAGAAACATATGGAGCTTCAACAACAATAATGTGAGTTCAGTTTCCTCTGGGGAACCTCAGAAGAGTAACAACCCTACTCCTGCAGCATCCAGTGGTAGCAGAAAGAACAAGGACGACGTCGTTCAGTATCACGTCAATGAAATATTTGAAGACGCCATCTCTCAGAGAACTTCATCACGTCAAGGCAATATTTCAGAACCTAATAAGCCTAATCATGCAAAAAGGAGTTTTAGGCTCATTTCGGAGAATAAAAATGTATCAAAAACCAAGAAAACTAGATGGGAACACAACTTGTCATCTTCTTCAAGCATAAATTTTCAGCAGCAGCCAAGCTCAAGCATATCATTCAATTCCAGTATTAGCCAAGAGCCTGATCAAGAGGCCATAGCACAGATGAAGGAGATGATATATAGGGCGGCAGCTTTCAGGCCAGTGAACTTAGGGTTGGAGGCAGTGGAAAAGCCAAGAAGGAAGAATGTGAGAATATCATCAGATCCACAGACCGTAGCAGCGAGGCAAAGGAGAGAGAGAATAAGTGAGAGAATTAGGGTTTTACAGAAGATAGTGCCTGGTGGAAGCAAAATGGACACAGCTTCAACGCTTGATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCACAGGTCAAAGCATTGGAAAGTCTAGGGGACAAGGTTCATTATTATTCTATGAACTGTAATCCATTCTCTTTTACAAACCCCAGTCATCAGTATAATTTCCAGCAATAA 1035 0.4155 MDGLLPWDTCQFDTNMPIFEEEAAGYSMPSLDYQIQETQNKTAQTDHRFNLYSAFDDLVPDFHDFDTDMADHRQQQFINGDTDDGNISMILSDSYIRNIWSFNNNNVSSVSSGEPQKSNNPTPAASSGSRKNKDDVVQYHVNEIFEDAISQRTSSRQGNISEPNKPNHAKRSFRLISENKNVSKTKKTRWEHNLSSSSSINFQQQPSSSISFNSSISQEPDQEAIAQMKEMIYRAAAFRPVNLGLEAVEKPRRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALESLGDKVHYYSMNCNPFSFTNPSHQYNFQQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0909 344 MobiDBLite consensus disorder prediction 192 215 - -
Lele42g0909 344 MobiDBLite consensus disorder prediction 167 191 - -
Lele42g0909 344 MobiDBLite consensus disorder prediction 147 166 - -
Lele42g0909 344 Pfam Helix-loop-helix DNA-binding domain 268 307 IPR011598 GO:0046983
Lele42g0909 344 Gene3D - 263 324 IPR036638 GO:0046983
Lele42g0909 344 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 83 335 IPR045843 GO:0003700|GO:0006355
Lele42g0909 344 SMART finulus 264 313 IPR011598 GO:0046983
Lele42g0909 344 MobiDBLite consensus disorder prediction 147 215 - -
Lele42g0909 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Lele42g0909 344 MobiDBLite consensus disorder prediction 108 132 - -
Lele42g0909 344 Coils Coil 297 317 - -
Lele42g0909 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 321 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0909 Lele-ChrLele42 21837715 21838749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0909 170 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 69.737 2.71e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele42g0909 HLH 1.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0909 42 21837715 21838749 Lele43g0460 43 4029250 4030859 hybridization
Lele42g0909 42 21837715 21838749 Lele44g0449 44 3363998 3365029 hybridization