Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0897 ATGAATGGTAGGTCGAGAAACGAGGAGGTATCTCCTCAGCTGCTGGATTTGATCCCATCAGAACGAGGGTGGCATGAAAACAGAGATGATGAAAGAAACCACCACAACAAGTCCTCAGAAGAGAGGAAACTTGAGCTTAGACTTGGTCCACCTGGTGATGAAGACGAATCTCTACTCTCTCTTGGTTACTTCTCAGCCTCCATTAACGCCCAGAAAACTGTGTCTTCTTCTCCTTGGGCTTCTTCAGGCTACCAGGACATTAATCAACACAAGGGGGTTTCATCATCATCATTCCTACAACAGCCTCATCCCTCTTCTGCAAATACAGCTGTACCCAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAGTAGCTCTTCTAAGGTTGTTCCTCAACATGAATCTCAGAATCAGCATCATGTGGTTGAATATAAGGTTGCTGGGAAGAAGCCTGTGGCTGACAACAACAACAACAACGTTGTTGGTAGTGGTAAAGGCATGTTTGTGAAGATCAACATGGATGGAGTTCCCATAGGCAGAAAAGTAGACCTTAATGCTTACGATAGCTATGAAAGACTCTCCTCTGCTGTTGATGAACTCTTTAGAGGCCTCCTTGCTGCTCAAAGAGATTCCTCTGGTGGTGGTGGTGGGATTCAGAACAAACCAGTGGAAGAAAAAGCCATTACAGGTGTATTGGATGGAAGTGGAGAATACACTCTGGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTGTCAACAGTGAAGAGGCTGCGTGTTCTGAAGAGCTCTGAGCTCTCTGCTTTCACTCTTGGTAGTAAGCAAGACAAGAAGACCACTTGA 918 0.4586 MNGRSRNEEVSPQLLDLIPSERGWHENRDDERNHHNKSSEERKLELRLGPPGDEDESLLSLGYFSASINAQKTVSSSPWASSGYQDINQHKGVSSSSFLQQPHPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSSSKVVPQHESQNQHHVVEYKVAGKKPVADNNNNNVVGSGKGMFVKINMDGVPIGRKVDLNAYDSYERLSSAVDELFRGLLAAQRDSSGGGGGIQNKPVEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKKTT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0897 305 MobiDBLite consensus disorder prediction 1 56 - -
Lele42g0897 305 Gene3D - 177 300 - -
Lele42g0897 305 Pfam AUX/IAA family 44 293 IPR033389 -
Lele42g0897 305 MobiDBLite consensus disorder prediction 21 52 - -
Lele42g0897 305 ProSiteProfiles PB1 domain profile. 182 288 IPR000270 GO:0005515
Lele42g0897 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 291 IPR003311 GO:0005634|GO:0006355
Lele42g0897 305 MobiDBLite consensus disorder prediction 91 129 - -
Lele42g0897 305 FunFam Auxin-responsive protein 178 300 - -
Lele42g0897 305 SUPERFAMILY CAD & PB1 domains 179 285 - -
Lele42g0897 305 MobiDBLite consensus disorder prediction 91 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0897 Lele-ChrLele42 21735172 21738133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0897 186 299 B3 DNA Binding Superfamily AT4G23980 33.333 4.66e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele42g0897 AUX_IAA 3e-68 CL0072