Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0896 ATGACTTTTTTCTGGGGACCTCACTTGTATTTGCTTCACTTTCTTCTCTTCCTTCTTCACCTCCAATCCCTTTCTTCGTATACCACACCCTTGGATTGTAAGGACACAGCCCGGGTCTGCACTTCTTTCTTAGCCTTTAAGCCTCAACCAAATCAAACCTTAGACTTAGTTCAGAGCATGTTTGATGTATTGCCTAAAGACATTACTGTTGAAGGCAACGACCGGGACGACATATTTATCAAAAAGAACTGTTCTTGTGCTGCTCGTACAAACAAATACATATCCAGCACTACTTATACTGTAAAATCCAATGAAGGGTTGGTTTATGATTTGGTGATGAAGGACTATGATGGGCTTGGTTTCTTGCCCAAAACGACCAGGAGGGCAGAAAACGGCGCCGTTATAGCACTGAACTTGTTATGTGGTTGCTCCAGTGGACCTTGGAACTATATGCTGAGTTATGTGATGAGAGAAAGTGATAGCATTGAATCTCTTGCAAGTCGGTTTGGAGTTAGTATGGATAGTATAGAGACAGTAAATGGCATCAACAATCCTGATAATATCACTGTGGTTCCTGGTGAGCCATATACCCAGAAGAATGATACTTCTGCAGCTCCTGTTTCTGCCCCTTCTATTGACAATGTTTCTGCTAGTCAAGTCAGTCATGCTCATGCACCCTATGTATGGATCGTTGGGGGTTTAGGGCTTGGTCTTGCCCTGATAATATTAAGCACAATTCTTTATTTCTGTGTTAGATCATCCAATTGTTTTGCTGAAGCAAGCACAAGTCATGAAAATGATGATGAAGGCGAGATCTCTCACAAATTTCATATCATTCAAAATCCAAGTTTTTGCTGTGGTTCAGGAAGGTACATACAGGGAAAACCTGTAGAACAGAGGCAATCTGATCGCGAATCCAACAACAACAGCCAGATTACTGCTCCCAAAGTTTCAACTTTGGGGATTGAAGTCTTTGAAGTGGAGAACCCTGTAGTTTTCACATATGAAGAGGTTTTTTCTGCAACTGATGGTTTCTCAGATTCAAATCGACTTGGTTATGGTATTTATGGTTCTGTTTATTATGGCTTCCTTCGTGACCAGGAGGTTGCTATTAAAAGAATGACTGCTACAAAAACTAAAGAGTTCTTGTCAGAGATGAAGGTCCTGTGCAAGGTTCATCATGCAAATCTGGTAGAATTGATCGGCTATGCTGCTAGTCATGATGAGCTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTTGGAAGCTTTTTGCATGATCAACTGACTAAGGGTTCTTCCTCACTCTCTTGGATCATGAGGGTCCAGATAGCACTTGATGCTGCTAGGGGCCTTGAGTACATACATGAACACACCAAAACCAATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGCTTCCTTTAGAGCAAAAATTTCAGATTTTGGGTTAGCAAAACTTGTTAGGAAATCAAATGAAGAAGAAATTACTGCCACCAAAGTTGTTGGCACATATGGTTATCTTGCACCAGAATACTTGAGCGATGGCCGTGCAACGACCAAAAGTGATGTCTATGCATTTGGCATTGTTCTTTTTGAGATAATATCAGGGAAGGAGGCAACTATTCGGACAGAAGGCAAAATGTCAGAAAATCCTGAGAGACGTCCTCTTGTATCTATAGTAAGTTCTTCTTTGCTCACAAGACATGATTCTGAATCCGGTGATATGTTAGGTTCTTCTTTACTCACAAGACATGATTCTGCATCCGGTGATATGTTTGGCAGAGTCTCATACTTTTACATTTCCACATTGCTTCACCGAAGAAGTCAAAAGTTCTCATCTCTTAGGAAATCATCTGATTCAATGAGTATGTCTAGTTTAAGAAATCATATTGATCCTAATATGATGGAGCTGTATCCCCATGATTGTGTATTTAAGATGGCTATGCTGGCAAAGCAGTGTGTGGATGATGATCCAATCTTAAGACCTGATATGAAACAAGTTGTGATTTCACTCTCACAGATCCTTCTGTCTTCTGTTGAGTGGGAAGCAACTCTAGCAGGGAACAGTCAAGTATTCAGTGGGCTTGTTCAAGGAAGATAG 2118 0.406 MTFFWGPHLYLLHFLLFLLHLQSLSSYTTPLDCKDTARVCTSFLAFKPQPNQTLDLVQSMFDVLPKDITVEGNDRDDIFIKKNCSCAARTNKYISSTTYTVKSNEGLVYDLVMKDYDGLGFLPKTTRRAENGAVIALNLLCGCSSGPWNYMLSYVMRESDSIESLASRFGVSMDSIETVNGINNPDNITVVPGEPYTQKNDTSAAPVSAPSIDNVSASQVSHAHAPYVWIVGGLGLGLALIILSTILYFCVRSSNCFAEASTSHENDDEGEISHKFHIIQNPSFCCGSGRYIQGKPVEQRQSDRESNNNSQITAPKVSTLGIEVFEVENPVVFTYEEVFSATDGFSDSNRLGYGIYGSVYYGFLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHDELFLIYEYAQKGSLGSFLHDQLTKGSSSLSWIMRVQIALDAARGLEYIHEHTKTNYVHRDIKTSNILLDASFRAKISDFGLAKLVRKSNEEEITATKVVGTYGYLAPEYLSDGRATTKSDVYAFGIVLFEIISGKEATIRTEGKMSENPERRPLVSIVSSSLLTRHDSESGDMLGSSLLTRHDSASGDMFGRVSYFYISTLLHRRSQKFSSLRKSSDSMSMSSLRNHIDPNMMELYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0896 705 Gene3D LysM domain 149 194 IPR036779 -
Lele42g0896 705 Gene3D Transferase(Phosphotransferase) domain 1 418 690 - -
Lele42g0896 705 FunFam PTI1-like tyrosine-protein kinase 3 417 591 - -
Lele42g0896 705 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 21 699 IPR044812 GO:0019199|GO:0045087
Lele42g0896 705 ProSitePatterns Protein kinases ATP-binding region signature. 351 372 IPR017441 GO:0005524
Lele42g0896 705 FunFam Kinase family protein 320 416 - -
Lele42g0896 705 Gene3D Phosphorylase Kinase; domain 1 319 416 - -
Lele42g0896 705 ProSiteProfiles LysM domain profile. 152 198 IPR018392 -
Lele42g0896 705 Pfam LysM domain 154 189 IPR018392 -
Lele42g0896 705 CDD LysM 153 190 IPR018392 -
Lele42g0896 705 Pfam Protein tyrosine and serine/threonine kinase 349 544 IPR001245 GO:0004672|GO:0006468
Lele42g0896 705 SMART serkin_6 345 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0896 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lele42g0896 705 ProSiteProfiles Protein kinase domain profile. 345 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0896 705 SUPERFAMILY Protein kinase-like (PK-like) 323 677 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0896 Lele-ChrLele42 21713323 21718189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0896 30 705 Receptor kinase-like Gene Family AT1G51940 58.046 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele42g0896 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0896 42 21713323 21718189 Lele43g0492 43 4475585 4480532 hybridization
Lele42g0896 42 21713323 21718189 Lele44g0461 44 3481387 3486212 hybridization