Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0895 ATGGCATCTCGCAGACAAATTGCTGCAATGAAACAATCCCTCTTTGATCAGGGATATCTGGATGAACAATTCATTCAGCTTGAGGAGCTGCAGGATGATGCAAATCCAAACTTCGTTGAAGAAATTGTCACTCTTTATTACCGCGATTCTTCAAAACTTATATCAAACATAGAGCAAGCATTGGAAAGGAACCCACTGGAATTTAACAGGCTAGACTCTATGATGCATCAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGAGCACTCTGTTTAGGGAATATTGCAGGGCTGGAAATGCTGAGGGATGCAAGAGGAGCTTCCAACAACTGAAGAGAGAATATGCCACACTGAGAAAGAAGCTTGAAGCTTATTTTCAGCAAGCAAGGCAAGCTGGGCCCTTTGAGGCAGCATGTCGCCCCAAATTCACCTCAGAAGAAAAGGAAGCAAAGGAAATGCACTAAGCAATCTTAACCACTGGCCTTTTCCACTGCCACTGGACCGCTGGTACTTGTGCACTGACTCAGAAGAAGATTGATTTGTTGACAGCATGGTGGAATTACCTTCTTGGAGCTTTCAAGCCAGCGTGTAACATCTTAATTACATTCAATGATGGGAAAAGTCGAAAGCAGGTTCCATTTAAAAAAGAGAGTGGCCAAACAGTCACTGCCCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGATTATAATCGAGCCAATGCAAGGGAAAAAGATTGACCACAATGGCATAAAAGTCGAATTACTCGGACAGATAGAGATGTATTTTGACAGAGGAAACTTTTATGACTTTACTTCCCTTGTACGAGAACTAGATGTTCCTGGAGATATTTATGAGAAGAAAACTTATCCATTTGAGTTTTCCACAGTTGAAATGCCATATGAGACATATAATGGGGTAAATGTCAGGCTTAGGTATGTTTTGAAAGTGACCATCAGTCGTGGTTATGCAGGAAGTATAATAGAGTACCAGGATTTTGTGGTCCGCAACTATTCTGCACCTCCATCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGCCTACACATTGAATTTGAATATAACAAAAGCAAGTATCATCTGAAAGATGTCATCATTGGCAAGATATATTTTCTCCTGGTAAGAATCAAGATAAAAAATATGGACCTTGAGATTAGGCGTCGGGAATCAACAGGTTCAGGTACCAACACCCATGTTGAGACCGAAACATTGGCAAAATTTGAGTTGATGGATGGTGCTCCTGTCCGAGGTGAGTCTATACCAATCAGACTGTTCCTCAGTCCCTACGAGCTGACCCCAACTCATCGCAACATTAATAACAAATTTAGTGTGAAGTACTTCTTAAATCTGGTGTTGGTTGATGAAGAGGACAGGCGATACTTTAAGCAGCAGGAAATCACAATGTATAGGCTGCAAGAAGAAACTTCCTGA 1479 0.4131 MASRRQIAAMKQSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSKLISNIEQALERNPLEFNRLDSMMHQFKGSSSSIGAKKVKAESTLFREYCRAGNAEGCKRSFQQLKREYATLRKKLEAYFQQARQAGPFEAACRPKFTSEEKEAKEMHXAILTTGLFHCHWTAGTCALTQKKIDLLTAWWNYLLGAFKPACNILITFNDGKSRKQVPFKKESGQTVTAPLFQSQENIAGKIIIEPMQGKKIDHNGIKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYEKKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTISRGYAGSIIEYQDFVVRNYSAPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGTNTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYFLNLVLVDEEDRRYFKQQEITMYRLQEETS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0895 492 CDD HPT 39 121 IPR008207 GO:0000160
Lele42g0895 492 Gene3D - 190 346 IPR014752 -
Lele42g0895 492 Gene3D HPT domain 1 142 IPR036641 GO:0000160
Lele42g0895 492 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 35 130 IPR008207 GO:0000160
Lele42g0895 492 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 196 489 IPR028934 GO:0006886
Lele42g0895 492 Coils Coil 106 133 - -
Lele42g0895 492 Pfam Vacuolar protein sorting-associated protein 26 198 473 IPR028934 GO:0006886
Lele42g0895 492 Gene3D - 347 492 IPR014752 -
Lele42g0895 492 FunFam Histidine-containing phosphotransfer protein 4 1 142 - -
Lele42g0895 492 FunFam Vacuolar protein sorting-associated protein 26 347 492 - -
Lele42g0895 492 Pfam Hpt domain 41 124 IPR008207 GO:0000160
Lele42g0895 492 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 136 IPR036641 GO:0000160
Lele42g0895 492 FunFam vacuolar protein sorting-associated protein 26A 191 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0895 Lele-ChrLele42 21701590 21710379 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0895 42 21701590 21710379 Lele37g0368 37 3094571 3095062 CCT
Lele42g0895 42 21701590 21710379 Lele38g0345 38 2800898 2801386 CCT
Lele42g0895 42 21701590 21710379 Lele39g1059 39 19202897 19203388 CCT
Lele42g0895 42 21701590 21710379 Lele40g0324 40 2665740 2666225 CCT
Lele38g0331 38 2622252 2628895 Lele42g0895 42 21701590 21710379 CCT
Lele40g0311 40 2502857 2509419 Lele42g0895 42 21701590 21710379 CCT
Lele42g0895 42 21701590 21710379 Lele43g0493 43 4481572 4491294 hybridization
Lele42g0895 42 21701590 21710379 Lele44g0462 44 3488295 3496404 hybridization