Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0893 ATGACGCGGCGGTGCTCTCACTGCAGCAATAACGGGCACAACTCCCGAACTTGCCCGTCCCGTGGTGGAGGTGCCGGGGGCGGAAGCGCTGGAGGTGTGAAACTATTCGGTGTTAGACTAACCGATGGATCAATCATTAAAAAGAGCGCGAGCATGGGGAATCTCTCCGCCCATTACTATTCTTCTTCGCCAGCGGCTGGATCACCGAATCCCGGGTCGCCGTGCTCTGACCCGCTCCGAGACCTGGTTCATGAGCAAGACGGGTGCTTGTCCGACGATCCCTCTCATGCCTCTAACTCCGCGAACCGTCGTGGAGAAAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACATAAGATGTTTTTAATTGGTCTCCAGAAGCTGGGTAAAGGTGATTGGCGAGGCATATCTCGCAATTTTGTTGTGTCAAGGACTCCTACTCAAGTAGCAAGTCATGCCCAAAAGTACTTTATCCGGCAGAGCAATGCTACCCGGAGAAGAAGGCGTGCCAGTCTTTTTGACATGGTTCCAGATGTGGCTTCAGATCCACCTTCGGTGCCAGAAGAACAAGTATTATTGCCACCTTCTGAGAACTCACAACCTGGTAGTGCAAATTTACAACCATCATTAGATCTCTCCCTCAAGTCAGAATTTGAACCCATGGAAACTAATTGTGAAGAAAATGTGGAAGAGCCATATGAAACTATGGTAAGATCGAGTGGACTGACACCAGTGGCTAACGGATTCATGCCAACGTACGTACCTGTTGCATTTTCCTTATGGCCATCAAATGCAGCCTCCTTTGAAGAAGTTAAGGAAGCTGAAAAAGCTCATCATCAGGTCCTTAAGCCAATCCCAGTCTTTCCTAAGGAACCAGTCAATGTTGATGACCTTGTTGGCATGTCTCAACTGAGTTTGGGGGAAACACGAAAAGGTGATAGAGAGCCTTCCCCACTTTCTTTGAAGTTGCTGGGGGAGCCATCAAGGCAATCAGCGTTCCATGCAAATGCTCCAGTTGGTGGTTCAGATTTAAACAATGGCAAGAACAGTGCAATTCAAGCAGCTTAA 1068 0.486 MTRRCSHCSNNGHNSRTCPSRGGGAGGGSAGGVKLFGVRLTDGSIIKKSASMGNLSAHYYSSSPAAGSPNPGSPCSDPLRDLVHEQDGCLSDDPSHASNSANRRGERKKGVPWTEEEHKMFLIGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNATRRRRRASLFDMVPDVASDPPSVPEEQVLLPPSENSQPGSANLQPSLDLSLKSEFEPMETNCEENVEEPYETMVRSSGLTPVANGFMPTYVPVAFSLWPSNAASFEEVKEAEKAHHQVLKPIPVFPKEPVNVDDLVGMSQLSLGETRKGDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNNGKNSAIQAA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0893 355 MobiDBLite consensus disorder prediction 192 208 - -
Lele42g0893 355 MobiDBLite consensus disorder prediction 177 208 - -
Lele42g0893 355 MobiDBLite consensus disorder prediction 1 18 - -
Lele42g0893 355 MobiDBLite consensus disorder prediction 305 355 - -
Lele42g0893 355 Gene3D - 113 162 - -
Lele42g0893 355 FunFam transcription factor MYB1R1 111 162 - -
Lele42g0893 355 SMART sant 109 159 IPR001005 -
Lele42g0893 355 MobiDBLite consensus disorder prediction 61 112 - -
Lele42g0893 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 161 IPR017930 -
Lele42g0893 355 Pfam Myb-like DNA-binding domain 112 157 IPR001005 -
Lele42g0893 355 PANTHER TRANSCRIPTION FACTOR KUA1 3 284 - -
Lele42g0893 355 SUPERFAMILY Homeodomain-like 107 162 IPR009057 -
Lele42g0893 355 ProSiteProfiles Myb-like domain profile. 105 157 IPR001005 -
Lele42g0893 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 108 160 IPR006447 GO:0003677
Lele42g0893 355 MobiDBLite consensus disorder prediction 1 26 - -
Lele42g0893 355 CDD SANT 112 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0893 Lele-ChrLele42 21691063 21694529 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g0893 Myb_DNA-binding 1.8e-10 CL0123