Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0888 ATGCCGGTGCTGCGTAGTGGAGTGCGCAGGGGCCGAGCAGCAGCTAAGCAACAGCAAGAGAAGAAGCAGCCTAATCCGATCGAAGAAAGAGAAGCGATTGCGACGAGGACAAGGAGGAGAAGGGCGGCGGCGGCGGCAGGGCCGAAGAATAACAAGCAACGGAAACAGCAACAGAAGCAGGTGGTGGTGGATGTGGATAATGACAACGTAGTTGTACCGGCGAAGGAGGAGGAGGAGGAGGCGAAAAGGGGTTTGGACGAAGCTCTTGTTCGTGTTGGCACCACAGGTGGTAGGGCCAGTGGTGGCGTGGTTGGCGATTGTGGAGAGGAGAAGGAAGAAATAAGGGAGGAGAAAATGGGTGATCATGATAGTGGAAAGGATAAGGCCAATGTTGGGGAAGATGAGGGGAATACCGCCCCTGTTCCTAAGAAGGTTCAAGTGGGCGGTTCCCCTTGGTATAAAGTTGAAAAAAAACTGGGGAAGGGTGGATTTGGACAAGTATATGTTGGTCGCCGTTTTAATGTTGTAAATATGAATGAGAGAACTGGACCTGGAGCTGTGGAGGTTGCACTGAAATTTGAGCATAGAAGTAGTAAAGGATGTAACTATGGACCACCACACGAGTGGCAAGTGTACAACACTCTAGGTGGCAGCCATGGTGTGCCACGAGTACACTACAAGGGTAGGCAAGGTGACTATTATATCATGGTTATGGATATGCTGGGGCCTAGCTTGTGGGATGTGTGGAATAACAGCTCTTATTCAATGTCCACTGAAATGGTTGCATGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGACGTGAAGCCTGAAAATTTTCTGCTTGGTTCTCCTGGGACCCCAGATGAGAAGAGATTGTTTCTCGTTGATCTTGGATTAGCATCTAGATGGCGGGATAATTCGACAGGTTCACATGTGGAATATGACCAAAGGCCAGATGTTTTTAGGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCCAGCAGGAGGGATGATCTGGAATCCCTTGCTTATACATTGATTTTCCTTCTTCGAGGCCGTCTCCCTTGGCAGGGGTACCAGGGAGAAAACAAAGGGTTTTTTGTTTGCAAGAAGAAGATGGGAACAACTCCAGAGTGCCTATGTTGCTTCTGCCCCCAGCCTTTTAGGCTTTTTGTTGAACATGTAGTAAATCTGAAGTTTGATGAAGATCCTCACTACACAAAATATATTTCTCTGTTTGATGGGATTGTTGGTCCAAACCCAGACATTAGACCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGTCGGTTGGCCATGGAAGAAGAGGACGATGAACAACCAAAAAAGAAGTTCCGAATGGGTCTACCAGCAACACAGTGGATAAGCATATATAATGCTCGCAGACCAATGAAACAAAGATACCACTACAATGTGTCAGATGGAAGGCTTGCACAGCACATCGAAAAGGGAAATGAGGATGGCTTATATATAAGCAGTGTGGCTTCATGTTCGAACCTGTGGGCAATAATCATGGATGCAGGCACTGGTTTCTCCGACCAAGTTTATGAACTCTCTCCTCACTTTCTCCATAAGGAATGGATAATGGAGCAGTGGGAAAAAAGTTACTACATCAGTGCAGTTGCTGGAGCTACAAACGGGAGCTCATTAGTAGTCATGTCAAAGGGCACATCATTTGTACAGCAATCTTACAAAGTTAGCGATCCATTTCCTTTCAAGTGGATTAACAAAAAATGGAGGGAAGGCTTCTATGTTACTGCAATGGCTACCTCAGGGGTCAGATGGGGAGTAGTTATGTCACGCGGTGCTGGATTTTGCGACCAGGTGGTTGAACTGGATTTTCTTTATCCCAGCGAAGGGATTCACAAGCGTTGGGATCATGGATACCGCATAACAGCAACTGCCGCAACTTGGGACCAGACCGCTTTAGTGCTCAGTGTGCCGAGGAGGAAGCCTGCAGATGAAACACAGGAAACCCTGAGGACTACTGTTTTTCCTAGTACGCATGTCAAGGAGAAATGGGCAAAGAACCTTTATATTGCATCAGTTTGCTATGGACGAACTGTTTCTTGA 2154 0.4698 MPVLRSGVRRGRAAAKQQQEKKQPNPIEEREAIATRTRRRRAAAAAGPKNNKQRKQQQKQVVVDVDNDNVVVPAKEEEEEAKRGLDEALVRVGTTGGRASGGVVGDCGEEKEEIREEKMGDHDSGKDKANVGEDEGNTAPVPKKVQVGGSPWYKVEKKLGKGGFGQVYVGRRFNVVNMNERTGPGAVEVALKFEHRSSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNSSYSMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGSPGTPDEKRLFLVDLGLASRWRDNSTGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFFVCKKKMGTTPECLCCFCPQPFRLFVEHVVNLKFDEDPHYTKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKFRMGLPATQWISIYNARRPMKQRYHYNVSDGRLAQHIEKGNEDGLYISSVASCSNLWAIIMDAGTGFSDQVYELSPHFLHKEWIMEQWEKSYYISAVAGATNGSSLVVMSKGTSFVQQSYKVSDPFPFKWINKKWREGFYVTAMATSGVRWGVVMSRGAGFCDQVVELDFLYPSEGIHKRWDHGYRITATAATWDQTALVLSVPRRKPADETQETLRTTVFPSTHVKEKWAKNLYIASVCYGRTVS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0888 717 Pfam Protein kinase domain 153 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0888 717 ProSitePatterns Protein kinases ATP-binding region signature. 159 192 IPR017441 GO:0005524
Lele42g0888 717 MobiDBLite consensus disorder prediction 1 83 - -
Lele42g0888 717 MobiDBLite consensus disorder prediction 96 145 - -
Lele42g0888 717 MobiDBLite consensus disorder prediction 14 38 - -
Lele42g0888 717 CDD STKc_CK1 153 429 - -
Lele42g0888 717 Gene3D Transferase(Phosphotransferase) domain 1 121 473 - -
Lele42g0888 717 SMART serkin_6 153 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0888 717 MobiDBLite consensus disorder prediction 105 133 - -
Lele42g0888 717 SUPERFAMILY Protein kinase-like (PK-like) 153 433 IPR011009 -
Lele42g0888 717 FunFam casein kinase 1-like protein HD16 126 473 - -
Lele42g0888 717 PANTHER CASEIN KINASE-RELATED 145 681 - -
Lele42g0888 717 MobiDBLite consensus disorder prediction 50 64 - -
Lele42g0888 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Lele42g0888 717 ProSiteProfiles Protein kinase domain profile. 153 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0888 Lele-ChrLele42 21627249 21631890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0888 120 378 AGC Kinase Gene Family AT3G08730 23.755 1.24e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lele42g0888 Pkinase 1.9e-16 CL0016