Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0884 ATGTCAATGGAAGTACCGGAGTGCTTTGTCGGTGGCTATTTCTCTGCCGGAGGAGATCAATTCTCGTCGGAGAAGCTCCATGGTGCTGACCAGAAGCCTGGTGAGCCCTTCGTCATTGACGACCTCCTTGACTTTTCCAACGCCGACGCTATGATCGTGTCCGACGGTTTCTTCGATAATGCCGCCGGTAACTCCACTGATTCATCCACTTTCACCGCCGTTGACAGCTGTAATTCATCCGTTTCCGGCGGTGACAATCATTTCTCCTCCGGTTACGCTGGCTCCAGCGGCTTCGGCGATCCTCAATTATCTGGAGAACTCTGCGTCCCGTATGACGACTTGGCTGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCATTTTCTGTCGAAGATGAGCTAAAAACACTCCACCTCCTCTCCGGAACCACTGCTTCCAGCGTCGGCCCGAAACCTCAGACACCAGAGTCCTCCTCTTCCTCCGAAACACTTCCACCCTTCGCTGCCGACACCAGTCGAAACGCACCGATCTTCCATCCAGAAACTCCGCTTCCAGGTAAAGCTCGAAGCAAGCGTACACGTGCTGCCCCCGGGGATTGGTCTACGCGCCTCCTCCACCTGATCACCCCTACGGGCGTTTCGGAACCGACGCAAGCGAAGCCTGTGACGGCTAAGAAAAGAGAGAGTTCGAATTCGGAGTACTCTTCGGATAGGAAATGCCTGCATTGCGCATCCGAGAAGACTCCGCAATGGCGGACCGGACCAATGGGTCCCAAGACGTTGTGCAATGCTTGTGGAGTGAGGTACAAATCCGGGAGGCTGGTGCCGGAGTACCGACCGGCGGCGAGCCCTACTTTTATATCGTCAAGGCACTCCAATTCGCACAGGAAGGTGATGGAGATGAGGAGGCAGAAGGAACTGCAGAGGCAGCATCAATTGGTTAGACAGAGTTCAATTTTCAGCGTTTCTCATGGCGGAGATGAGTTCTTGATCCCTCATCCCAGCGGTCCAGATTACAGGCACATGATCTAG 1032 0.5426 MSMEVPECFVGGYFSAGGDQFSSEKLHGADQKPGEPFVIDDLLDFSNADAMIVSDGFFDNAAGNSTDSSTFTAVDSCNSSVSGGDNHFSSGYAGSSGFGDPQLSGELCVPYDDLAELEWLSNFVEDSFSVEDELKTLHLLSGTTASSVGPKPQTPESSSSSETLPPFAADTSRNAPIFHPETPLPGKARSKRTRAAPGDWSTRLLHLITPTGVSEPTQAKPVTAKKRESSNSEYSSDRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFISSRHSNSHRKVMEMRRQKELQRQHQLVRQSSIFSVSHGGDEFLIPHPSGPDYRHMI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0884 343 MobiDBLite consensus disorder prediction 143 168 - -
Lele42g0884 343 FunFam GATA transcription factor 229 316 - -
Lele42g0884 343 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Lele42g0884 343 MobiDBLite consensus disorder prediction 207 225 - -
Lele42g0884 343 PANTHER GATA TRANSCRIPTION FACTOR 31 309 - -
Lele42g0884 343 MobiDBLite consensus disorder prediction 143 235 - -
Lele42g0884 343 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Lele42g0884 343 PIRSF Txn_fac_GATA_plant 22 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele42g0884 343 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Lele42g0884 343 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Lele42g0884 343 Gene3D - 229 313 IPR013088 GO:0006355|GO:0008270
Lele42g0884 343 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Lele42g0884 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0884 Lele-ChrLele42 21589999 21591307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0884 35 343 C2C2-Gata Transcription Factor Family AT4G32890 46.933 1.52e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele42g0884 GATA 3.1e-14 CL0167