Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0879 ATGACACTACTTCTCACTGAATCTGCTGCCTCCTCTGAAACTTGTTCTTCTTCCTCCTCTGATTCCAAGTCTCACACCCCCAGACCCACCAAAAGACCTCGACCCTCTCCTTCTTCTTCGTCGTCGTCCTCGTCTTCTTCTTCGTCTTCTTCTGATTCTTCCGGCAAGCTCCCGCACTACCATGGAGTCAGAAAGCGGAGCTGGGGCAAATGGGTGTCGGAGATTCGTGAGCCTCGCAAGAAGTCTCGCATCTGGCTCGGCACTTTCGCCACTCCAGAAATGGCAGCTCGAGCCCACGACGTCGCCGCTCTGACCATCAAAGGCAAATCCGCCATTCTCAACTTTCCTCAAATTGCCGCCCTCCTTCCCAGACCCGCCACGTGCTCCCCACATGACATTCAAAAAGCAGCTTCCACCGCTGCCGCCATGGTCGAGTTCGACGCCGTGCAGCCCTCAGAAACATCCAGGTCAGAGTCAGAGTCCACGGAGTCCTCCGAGCTGAGCGAGATAGTGGAATTGCCGAACATAGAAGAAGAGAACTTCCACTCGGCCGATTTCATATGGATAGACTCGGCAGATAGTTGGGTGTTTCCGGGTATGGATATGGGTATGGGTTCGGATGATTCGGAACTGAGTTCCATTTTCTGCCAACAATTCTCAGAGGAGATACCACTCTGGGATTGA 684 0.5351 MTLLLTESAASSETCSSSSSDSKSHTPRPTKRPRPSPSSSSSSSSSSSSSSDSSGKLPHYHGVRKRSWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGKSAILNFPQIAALLPRPATCSPHDIQKAASTAAAMVEFDAVQPSETSRSESESTESSELSEIVELPNIEEENFHSADFIWIDSADSWVFPGMDMGMGSDDSELSSIFCQQFSEEIPLWD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0879 227 MobiDBLite consensus disorder prediction 149 168 - -
Lele42g0879 227 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Lele42g0879 227 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Lele42g0879 227 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Lele42g0879 227 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Lele42g0879 227 MobiDBLite consensus disorder prediction 1 61 - -
Lele42g0879 227 MobiDBLite consensus disorder prediction 1 24 - -
Lele42g0879 227 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Lele42g0879 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 182 - -
Lele42g0879 227 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677
Lele42g0879 227 MobiDBLite consensus disorder prediction 35 56 - -
Lele42g0879 227 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Lele42g0879 227 Gene3D AP2/ERF domain 59 118 IPR036955 GO:0003700|GO:0006355
Lele42g0879 227 FunFam Ethylene-responsive transcription factor 2 59 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0879 Lele-ChrLele42 21544180 21544863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0879 58 220 AP2-EREBP Transcription Factor Family AT3G16280 50.562 5.99e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele42g0879 AP2 5.8e-14 CL0081